C
Caty Chung
Researcher at University of Miami
Publications - 19
Citations - 1033
Caty Chung is an academic researcher from University of Miami. The author has contributed to research in topics: Ontology (information science) & Metadata. The author has an hindex of 14, co-authored 19 publications receiving 813 citations. Previous affiliations of Caty Chung include Scripps Research Institute & Icahn School of Medicine at Mount Sinai.
Papers
More filters
Journal ArticleDOI
The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations
Alexandra B Keenan,Sherry L. Jenkins,Kathleen M. Jagodnik,Simon Koplev,Edward He,Denis Torre,Zichen Wang,Anders B. Dohlman,Moshe C. Silverstein,Alexander Lachmann,Maxim V. Kuleshov,Avi Ma'ayan,Vasileios Stathias,Raymond Terryn,Daniel J. Cooper,Michele Forlin,Amar Koleti,Dusica Vidovic,Caty Chung,Stephan C. Schürer,Jouzas Vasiliauskas,Marcin Pilarczyk,Behrouz Shamsaei,Mehdi Fazel,Yan Ren,Wen Niu,Nicholas A. Clark,Shana White,Naim Al Mahi,Lixia Zhang,Michal Kouril,John F. Reichard,Siva Sivaganesan,Mario Medvedovic,Jaroslaw Meller,Rick J. Koch,Marc R. Birtwistle,Ravi Iyengar,Eric A. Sobie,Evren U. Azeloglu,Julia A. Kaye,Jeannette Osterloh,Kelly Haston,Jaslin Kalra,Steve Finkbiener,Jonathan Z. Li,Pamela Milani,Miriam Adam,Renan Escalante-Chong,Karen Sachs,Alexander LeNail,Divya Ramamoorthy,Ernest Fraenkel,Gavin Daigle,Uzma Hussain,Alyssa Coye,Jeffrey D. Rothstein,Dhruv Sareen,Loren Ornelas,Maria G. Banuelos,Berhan Mandefro,Ritchie Ho,Clive N. Svendsen,Ryan G. Lim,Jennifer Stocksdale,Malcolm Casale,Terri G. Thompson,Jie Wu,Leslie M. Thompson,Victoria Dardov,Vidya Venkatraman,Andrea Matlock,Jennifer E. Van Eyk,Jacob D. Jaffe,Malvina Papanastasiou,Aravind Subramanian,Todd R. Golub,Sean D. Erickson,Mohammad Fallahi-Sichani,Marc Hafner,Nathanael S. Gray,Jia-Ren Lin,Caitlin E. Mills,Jeremy L. Muhlich,Mario Niepel,Caroline E. Shamu,Elizabeth H. Williams,David Wrobel,Peter K. Sorger,Laura M. Heiser,Joe W. Gray,James E. Korkola,Gordon B. Mills,Mark A. LaBarge,Mark A. LaBarge,Heidi S. Feiler,Mark A. Dane,Elmar Bucher,Michel Nederlof,Damir Sudar,Sean M. Gross,David Kilburn,Rebecca Smith,Kaylyn Devlin,Ron Margolis,Leslie Derr,Albert Lee,Ajay Pillai +107 more
TL;DR: The LINCS program focuses on cellular physiology shared among tissues and cell types relevant to an array of diseases, including cancer, heart disease, and neurodegenerative disorders.
Journal ArticleDOI
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data.
Amar Koleti,Amar Koleti,Raymond Terryn,Raymond Terryn,Vasileios Stathias,Vasileios Stathias,Caty Chung,Caty Chung,Daniel J. Cooper,Daniel J. Cooper,John Paul Turner,John Paul Turner,Dusica Vidovic,Dusica Vidovic,Michele Forlin,Michele Forlin,Tanya T. Kelley,Tanya T. Kelley,Alessandro D'Urso,Alessandro D'Urso,Bryce K. Allen,Bryce K. Allen,Denis Torre,Kathleen M. Jagodnik,Lily Wang,Sherry L. Jenkins,Christopher C. Mader,Christopher C. Mader,Wen Niu,Wen Niu,Mehdi Fazel,Mehdi Fazel,Naim Al Mahi,Naim Al Mahi,Marcin Pilarczyk,Marcin Pilarczyk,Nicholas A. Clark,Nicholas A. Clark,Behrouz Shamsaei,Behrouz Shamsaei,Jarek Meller,Jarek Meller,Juozas Vasiliauskas,Juozas Vasiliauskas,John F. Reichard,John F. Reichard,Mario Medvedovic,Mario Medvedovic,Avi Ma'ayan,Ajay Pillai,Stephan C. Schürer,Stephan C. Schürer +51 more
TL;DR: TheLINCS Data Portal (LDP) is described, a unified web interface to access datasets generated by the LINCS DSGCs, and its underlying database, LINCS Data Registry (LDR).
Journal ArticleDOI
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures
Vasileios Stathias,John Paul Turner,Amar Koleti,Dusica Vidovic,Daniel J. Cooper,Mehdi Fazel-Najafabadi,Marcin Pilarczyk,Raymond Terryn,Caty Chung,Afoma C. Umeano,Daniel J.B. Clarke,Alexander Lachmann,John Erol Evangelista,Avi Ma'ayan,Mario Medvedovic,Stephan C. Schürer +15 more
TL;DR: The cornerstone of this update has been the decision to reprocess all high-level LINCS datasets and make them accessible at the data point level enabling users to directly access and download any subset of signatures across the entire library independent from the originating source, project or assay.
Journal ArticleDOI
Evolving BioAssay Ontology (BAO): modularization, integration and applications
Saminda Abeyruwan,Uma D. Vempati,Hande Küçük-McGinty,Ubbo Visser,Amar Koleti,Ahsan Mir,Kunie Sakurai,Caty Chung,Joshua A. Bittker,Paul A. Clemons,Steve Brudz,Anosha Siripala,Arturo J. Morales,Martin Romacker,David Twomey,Svetlana Bureeva,Vance Lemmon,Vance Lemmon,Stephan C. Schürer +18 more
TL;DR: The evolution of BAO related to its formal structures, engineering approaches, and content is described to enable modeling of complex assays and integration with other ontologies and datasets to enable effective integration, aggregation, retrieval, and analyses of drug screening data.
Journal ArticleDOI
Metadata standard and data exchange specifications to describe, model, and integrate complex and diverse high-throughput screening data from the library of integrated network-based cellular signatures (LINCS)
Uma D. Vempati,Caty Chung,Christopher C. Mader,Amar Koleti,Nakul Datar,Dusica Vidovic,David Wrobel,Sean D. Erickson,Jeremy L. Muhlich,Gabriel F. Berriz,Cyril H. Benes,Aravind Subramanian,Ajay S. Pillai,Caroline E. Shamu,Stephan C. Schürer +14 more
TL;DR: In this paper, the authors present metadata specifications for the most important molecular and cellular components and recommend them for adoption beyond the National Institutes of Health Library of Integrated Network-based Cellular Signatures (LINCS) program.