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Christian J. Buhay
Researcher at Baylor College of Medicine
Publications - 33
Citations - 31180
Christian J. Buhay is an academic researcher from Baylor College of Medicine. The author has contributed to research in topics: Genome & Exome sequencing. The author has an hindex of 29, co-authored 33 publications receiving 27910 citations. Previous affiliations of Christian J. Buhay include Human Genome Sequencing Center.
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Journal ArticleDOI
Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma.
W. Marston Linehan,Paul T. Spellman,Christopher J. Ricketts,Chad J. Creighton,Suzanne S. Fei,Caleb F. Davis,David A. Wheeler,Bradley A. Murray,Laura S. Schmidt,Cathy D. Vocke,Myron Peto,Abu Amar M. Al Mamun,Eve Shinbrot,Anurag Sethi,Samira A. Brooks,W. Kimryn Rathmell,Angela N. Brooks,Katherine A. Hoadley,A. Gordon Robertson,Denise Brooks,Reanne Bowlby,Sara Sadeghi,Hui Shen,Daniel J. Weisenberger,Moiz S. Bootwalla,Stephen B. Baylin,Peter W. Laird,Andrew D. Cherniack,Gordon Saksena,Scott M. Haake,Jun Li,Han Liang,Yiling Lu,Gordon B. Mills,Rehan Akbani,Mark D.M. Leiserson,Benjamin J. Raphael,Pavana Anur,Donald P. Bottaro,Laurence Albiges,Nandita Barnabas,Toni K. Choueiri,Bogdan Czerniak,Andrew K. Godwin,A. Ari Hakimi,Thai H. Ho,James J. Hsieh,Michael M. Ittmann,William Y. Kim,Bhavani Krishnan,Maria Merino,Kenna R. Mills Shaw,Victor E. Reuter,Ed Reznik,Carl Simon Shelley,Brian Shuch,Sabina Signoretti,Ramaprasad Srinivasan,Pheroze Tamboli,George Thomas,Satish K. Tickoo,Kenneth Burnett,Daniel Crain,Johanna Gardner,Kevin Lau,David Mallery,Scott Morris,Joseph Paulauskis,Robert Penny,Candace Shelton,W. Troy Shelton,Mark E. Sherman,Eric M. Thompson,Peggy Yena,Melissa T. Avedon,Jay Bowen,Julie M. Gastier-Foster,Mark Gerken,Kristen M. Leraas,Tara M. Lichtenberg,Nilsa C. Ramirez,Tracie Santos,Lisa Wise,Erik Zmuda,John A. Demchok,Ina Felau,Carolyn M. Hutter,Margi Sheth,Heidi J. Sofia,Roy Tarnuzzer,Zhining Wang,Liming Yang,Jean C. Zenklusen,Jiashan Zhang,Brenda Ayala,Julien Baboud,Sudha Chudamani,Jia Liu,Laxmi Lolla,Rashi Naresh,Todd Pihl,Qiang Sun,Yunhu Wan,Ye Wu,Adrian Ally,Miruna Balasundaram,Saianand Balu,Rameen Beroukhim,Tom Bodenheimer,Christian J. Buhay,Yaron S.N. Butterfield,Rebecca Carlsen,Scott L. Carter,Hsu Chao,Eric Chuah,Amanda Clarke,Kyle R. Covington,Mahmoud Dahdouli,Ninad Dewal,Noreen Dhalla,Harsha Doddapaneni,Jennifer Drummond,Stacey Gabriel,Richard A. Gibbs,Ranabir Guin,Walker Hale,Alicia Hawes,D. Neil Hayes,Robert A. Holt,Alan P. Hoyle,Stuart R. Jefferys,Steven J.M. Jones,Corbin D. Jones,Divya Kalra,Christie Kovar,Lora Lewis,Jie Li,Yussanne Ma,Marco A. Marra,Michael Mayo,Shaowu Meng,Matthew Meyerson,Piotr A. Mieczkowski,Richard A. Moore,Donna Morton,Lisle E. Mose,Andrew J. Mungall,Donna M. Muzny,Joel S. Parker,Charles M. Perou,Jeffrey Roach,Jacqueline E. Schein,Steven E. Schumacher,Yan Shi,Janae V. Simons,Payal Sipahimalani,Tara Skelly,Matthew G. Soloway,Carrie Sougnez,Angela Tam,Donghui Tan,Nina Thiessen,Umadevi Veluvolu,Min Wang,Matthew D. Wilkerson,Tina Wong,Junyuan Wu,Liu Xi,Jane Zhou,Jason Bedford,Fengju Chen,Yao Fu,Mark Gerstein,David Haussler,Katayoon Kasaian,Phillip H. Lai,Shiyun Ling,Amie Radenbaugh,David Van Den Berg,John N. Weinstein,Jingchun Zhu,Monique Albert,Iakovina Alexopoulou,Jeremiah J. Andersen,J. Todd Auman,John Bartlett,Sheldon I. Bastacky,Julie Bergsten,Michael L. Blute,Lori Boice,Roni J. Bollag,Jeff Boyd,Erik P. Castle,Ying-Bei Chen,John C. Cheville,Erin Curley,Benjamin Davies,April DeVolk,Rajiv Dhir,Laura Dike,John Eckman,Jay Engel,Jodi Harr,Ronald L. Hrebinko,Mei Huang,Lori Huelsenbeck-Dill,Mary Iacocca,Bruce L. Jacobs,Michael Lobis,Jodi K. Maranchie,Scott McMeekin,Jerome Myers,Joel Nelson,Jeremy Parfitt,Anil V. Parwani,Nicholas J. Petrelli,Brenda Rabeno,Somak Roy,Andrew Salner,Joel Slaton,Melissa L. Stanton,R. Houston Thompson,Leigh B. Thorne,Kelinda Tucker,Paul M. Weinberger,Cynthia Winemiller,Leigh Anne Zach,Rosemary E. Zuna +227 more
TL;DR: Type 1 and type 2 papillary renal-cell carcinomas were shown to be different types of renal cancer characterized by specific genetic alterations, with type 2 further classified into three individual subgroups on the basis of molecular differences associated with patient survival.
Journal ArticleDOI
The Somatic Genomic Landscape of Chromophobe Renal Cell Carcinoma
Caleb F. Davis,Christopher J. Ricketts,Min Wang,Lixing Yang,Andrew D. Cherniack,Hui Shen,Christian J. Buhay,Hyojin Kang,Sang Cheol Kim,Catherine C. Fahey,Kathryn E. Hacker,Gyan Bhanot,Dmitry A. Gordenin,Andy Chu,Preethi H. Gunaratne,Preethi H. Gunaratne,Michael Biehl,Sahil Seth,Benny Abraham Kaipparettu,Christopher A. Bristow,Lawrence A. Donehower,Eric Wallen,Angela B. Smith,Satish K. Tickoo,Pheroze Tamboli,Victor E. Reuter,Laura S. Schmidt,James J. Hsieh,James J. Hsieh,Toni K. Choueiri,A. Ari Hakimi,Chad J. Creighton,Margaret Morgan,David A. Wheeler,Richard A. Gibbs,Sabina Signoretti,A. Gordon Robertson,Elizabeth P. Henske,David J. Kwiatkowski,Christopher J. Ricketts,W. Marston Linehan,Michael P. Seiler,W. Kimryn Rathmell,Peter W. Laird,Brian Shuch,Donna M. Muzny,Hsu Chao,Mike Dahdouli,Liu Xi,Nipun Kakkar,Jeffrey G. Reid,Brittany Downs,Jennifer Drummond,Donna Morton,Harsha Doddapaneni,Lora Lewis,Adam C. English,Qingchang Meng,Christie Kovar,Qiaoyan Wang,Walker Hale,Alicia Hawes,Divya Kalra,Kimberly Walker,Bradley A. Murray,Carrie Sougnez,Gordon Saksena,Scott L. Carter,Steven E. Schumacher,Barbara Tabak,Travis I. Zack,Gad Getz,Rameen Beroukhim,Stacey Gabriel,Matthew Meyerson,Adrian Ally,Miruna Balasundaram,Inanc Birol,Denise Brooks,Yaron S.N. Butterfield,Eric Chuah,Amanda Clarke,Noreen Dhalla,Ranabir Guin,Robert A. Holt,Katayoon Kasaian,Darlene Lee,Haiyan I. Li,Emilia L. Lim,Yussanne Ma,Michael Mayo,Richard A. Moore,Andrew J. Mungall,Jacqueline E. Schein,Payal Sipahimalani,Angela Tam,Nina Thiessen,Tina Wong,Steven J.M. Jones,Marco A. Marra,J. Todd Auman,Donghui Tan,Shaowu Meng,Corbin D. Jones,Katherine A. Hoadley,Piotr A. Mieczkowski,Lisle E. Mose,Stuart R. Jefferys,Jeffrey Roach,Umadevi Veluvolu,Matthew D. Wilkerson,Scot Waring,Elizabeth Buda,Junyuan Wu,Tom Bodenheimer,Alan P. Hoyle,Janae V. Simons,Mathew G. Soloway,Saianand Balu,Joel S. Parker,D. Neil Hayes,Charles M. Perou,Daniel J. Weisenberger,Moiz S. Bootwalla,Timothy J. Triche,Phillip H. Lai,David Van Den Berg,Stephen B. Baylin,Fengju Chen,Cristian Coarfa,Michael S. Noble,Daniel DiCara,Hailei Zhang,Juok Cho,David I. Heiman,Nils Gehlenborg,Doug Voet,Pei Lin,Scott Frazer,Petar Stojanov,Yingchun Liu,Lihua Zou,Jaegil Kim,Michael S. Lawrence,Lynda Chin,Alexei Protopopov,Xingzhi Song,Jianhua Zhang,Angeliki Pantazi,Angela Hadjipanayis,Eunjung Lee,Lovelace J. Luquette,Semin Lee,Michael Parfenov,Netty Santoso,Jonathan G. Seidman,Andrew Wei Xu,Raju Kucherlapati,Peter J. Park,Junehawk Lee,Steven A. Roberts,Leszek J. Klimczak,David C. Fargo,Martin Lang,Yoon-La Choi,June Koo Lee,Woong-Yang Park,Wenyi Wang,Yu Fan,Jaeil Ahn,Rehan Akbani,John N. Weinstein,David Haussler,Singer Ma,Amie Radenbaugh,Jingchun Zhul,Tara M. Lichtenberg,Erik Zmuda,Aaron D. Black,Benjamin Hanf,Nilsa C. Ramirez,Lisa Wise,Jay Bowen,Kristen M. Leraas,Tracy M. Hall,Julie M. Gastier-Foster,William G. Kaelin,Leigh B. Thorne,Lori Boice,Mei Huang,Cathy D. Vocke,James Peterson,Robert Worrell,Maria J. Merino,Bogdan Czerniak,Kenneth Aldape,Christopher G. Wood,Paul T. Spellman,Michael B. Atkins,John C. Cheville,R. Houston Thompson,Mark A. Jensen,Todd Pihl,Yunhu Wan,Brenda Ayala,Julien Baboud,Sudhakar Velaga,Jessica Walton,Jia Liu,Sudha Chudamani,Ye Wu,Margi Sheth,Kenna R. Mills Shaw,John A. Demchok,Tanja M. Davidsen,Liming Yang,Zhining Wang,Roy Tarnuzzer,Jiashan Zhang,Greg Eley,Ina Felau,Jean C. Zenklusen,Carolyn M. Hutter,Mark S. Guyer,Bradley A. Ozenberger,Heidi J. Sofia +225 more
TL;DR: Genomic rearrangements lead to recurrent structural breakpoints within TERT promoter region, which correlates with highly elevated TERT expression and manifestation of kataegis, representing a mechanism of TERT upregulation in cancer distinct from previously observed amplifications and point mutations.
Journal ArticleDOI
A Catalog of Reference Genomes from the Human Microbiome
Karen E. Nelson,George M. Weinstock,Sarah K. Highlander,Kim C. Worley,Heather Huot Creasy,Jennifer R. Wortman,Douglas B. Rusch,Makedonka Mitreva,Erica Sodergren,Asif T. Chinwalla,Michael Feldgarden,Dirk Gevers,Brian J. Haas,Ramana Madupu,Doyle V. Ward,Bruce W. Birren,Richard A. Gibbs,Barbara A. Methé,Joseph F. Petrosino,Robert L. Strausberg,Granger G. Sutton,Owen White,Richard K. Wilson,Scott Durkin,Michelle G. Giglio,Sharvari Gujja,Clint Howarth,Chinnappa D. Kodira,Nikos C. Kyrpides,Teena Mehta,Donna M. Muzny,Matthew D. Pearson,Kymberlie H. Pepin,Amrita Pati,Xiang Qin,Chandri N. Yandava,Qiandong Zeng,Lan Zhang,Aaron M. Berlin,Lei Chen,Theresa A. Hepburn,Justin Johnson,Jamison McCorrison,Jason R. Miller,Patrick Minx,Chad Nusbaum,Carsten Russ,Sean M. Sykes,Chad Tomlinson,Sarah Young,Wesley C. Warren,Jonathan H. Badger,Jonathan Crabtree,Victor Markowitz,Joshua Orvis,Andrew Cree,Steve Ferriera,Lucinda Fulton,Robert S. Fulton,Marcus Gillis,Lisa Hemphill,Vandita Joshi,Christie Kovar,Manolito Torralba,Kris A. Wetterstrand,Amr Abouellleil,Aye Wollam,Christian J. Buhay,Yan Ding,Shannon Dugan,Michael Fitzgerald,Mike Holder,Jessica B. Hostetler,Sandra W. Clifton,Emma Allen-Vercoe,Ashlee M. Earl,Candace N. Farmer,Konstantinos Liolios,Michael G. Surette,Qiang Xu,Craig Pohl,Katarzyna Wilczek-Boney,Dianhui Zhu +82 more
TL;DR: Results from an initial reference genome sequencing of 178 microbial genomes allow for ~40% of random sequences from the microbiome of the gastrointestinal tract to be associated with organisms based on the match criteria used, suggesting that the authors are still far from saturating microbial species genetic data sets.
Journal ArticleDOI
Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators
Daniel W. Bellott,Jennifer F. Hughes,Helen Skaletsky,Laura G. Brown,Tatyana Pyntikova,Ting-Jan Cho,Natalia Koutseva,Sara Zaghlul,Tina Graves,Susie Rock,Colin Kremitzki,Robert S. Fulton,Shannon Dugan,Yan Ding,Donna Morton,Ziad Khan,Lora Lewis,Christian J. Buhay,Qiaoyan Wang,Jennifer Watt,Michael Holder,Sandy Lee,Lynne V. Nazareth,Jessica Alföldi,Steve Rozen,Donna M. Muzny,Wesley C. Warren,Richard A. Gibbs,Richard K. Wilson,David C. Page +29 more
TL;DR: It is proposed that beyond its roles in testis determination and spermatogenesis, the Y chromosome is essential for male viability, and has unappreciated roles in Turner’s syndrome and in phenotypic differences between the sexes in health and disease.
Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators
Jennifer F. Hughes,Helen Skaletsky,Laura G. Brown,Tatyana Pyntikova,Ting-Jan Cho,Natalia Koutseva,Sara Zaghlul,Tina Graves,Susie Rock,Colin Kremitzki,Robert S. Fulton,Shannon Dugan,Yan Ding,Donna Morton,Ziad Khan,Lora Lewis,Christian J. Buhay,Qiaoyan Wang,Jennifer Watt,Michael Holder,Sandy Lee,Lynne V. Nazareth,Jessica Alföldi,Steve Rozen,Donna M. Muzny,Wesley C. Warren,Richard A. Gibbs,Rick K. Wilson,Daniel W. Bellott,David C. Page +29 more
TL;DR: This article reconstructed the evolution of the Y chromosome across eight mammals to identify biases in gene content and the selective pressures that preserved the surviving ancestral genes, and concluded that the gene content of Y chromosome became specialized through selection to maintain the ancestral dosage of homologous X-Y gene pairs that function as broadly expressed regulators of transcription, translation and protein stability.