D
Daniel Hirschstein
Researcher at Allen Institute for Brain Science
Publications - 8
Citations - 1616
Daniel Hirschstein is an academic researcher from Allen Institute for Brain Science. The author has contributed to research in topics: Biology & Cell type. The author has an hindex of 2, co-authored 2 publications receiving 857 citations.
Papers
More filters
Journal ArticleDOI
Shared and distinct transcriptomic cell types across neocortical areas
Bosiljka Tasic,Zizhen Yao,Lucas T. Graybuck,Kimberly A. Smith,Thuc Nghi Nguyen,Darren Bertagnolli,Jeff Goldy,Emma Garren,Michael N. Economo,Sarada Viswanathan,Osnat Penn,Trygve E. Bakken,Vilas Menon,Vilas Menon,Jeremy A. Miller,Olivia Fong,Karla E. Hirokawa,Kanan Lathia,Christine Rimorin,Michael Tieu,Rachael Larsen,Tamara Casper,Eliza Barkan,Matthew Kroll,Sheana Parry,Nadiya V. Shapovalova,Daniel Hirschstein,Julie Pendergraft,Heather A. Sullivan,Tae Kyung Kim,Aaron Szafer,Nick Dee,Peter A. Groblewski,Ian R. Wickersham,Ali Cetin,Julie A. Harris,Boaz P. Levi,Susan M. Sunkin,Linda Madisen,Tanya L. Daigle,Loren L. Looger,Amy Bernard,John W. Phillips,Ed S. Lein,Michael Hawrylycz,Karel Svoboda,Allan R. Jones,Christof Koch,Hongkui Zeng +48 more
TL;DR: This study establishes a combined transcriptomic and projectional taxonomy of cortical cell types from functionally distinct areas of the adult mouse cortex and identifies 133 transcriptomic types of glutamatergic neurons to their long-range projection specificity.
Posted ContentDOI
Shared and distinct transcriptomic cell types across neocortical areas
Bosiljka Tasic,Zizhen Yao,Kimberly A. Smith,Lucas T. Graybuck,Thuc Nghi Nguyen,Darren Bertagnolli,Jeff Goldy,Emma Garren,Michael N. Economo,Sarada Viswanathan,Osnat Penn,Trygve E. Bakken,Vilas Menon,Jeremy A. Miller,Olivia Fong,Karla E. Hirokawa,Kanan Lathia,Christine Rimorin,Michael Tieu,Rachael Larsen,Tamara Casper,Eliza Barkan,Matthew Kroll,Seana Parry,Nadiya V. Shapovalova,Daniel Hirschstein,Julie Pendergraft,Tae Kyung Kim,Aaron Szafer,Nick Dee,Peter A. Groblewski,Ian R. Wickersham,Ali Cetin,Julie A. Harris,Boaz P. Levi,Susan M. Sunkin,Linda Madisen,Tanya L. Daigle,Loren L. Looger,Amy Bernard,John W. Phillips,Ed S. Lein,Michael Hawrylycz,Karel Svoboda,Allan R. Jones,Christof Koch,Hongkui Zeng +46 more
TL;DR: A combined transcriptomic and projectional taxonomy of cortical cell types from functionally distinct regions of the mouse cortex is established and correspondence between excitatory transcriptomic types and their region-specific long-range target specificity is demonstrated.
Posted ContentDOI
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Zizhen Yao,Cindy T. J. van Velthoven,Michael Kunst,Meng Zhang,Delissa McMillen,Changkyu Lee,Won Jung,Jeff Goldy,Aliya Abdelhak,Pamela Baker,Eliza Barkan,Darren Bertagnolli,Jazmin Campos,Daniel Carey,Tamara Casper,Anish Chakka,Rushil Chakrabarty,Sakshi Chavan,Min Chen,Michael Clark,Jennie Close,Kirsten Crichton,Scott Daniel,Tim A. Dolbeare,Lauren Ellingwood,James Gee,Alexandra Glandon,Jessica Gloe,Joshua Gould,James Gray,Nathaniel Guilford,Junitta Guzman,Daniel Hirschstein,Windy Ho,Kelly Jin,Matthew R Kroll,Kanan Lathia,Arielle Leon,Brian Long,Zoe Maltzer,Naomi Martin,Rachel A. McCue,Emma Meyerdierks,Thuc Nghi Nguyen,Trangthanh Pham,Christine Rimorin,Augustin Ruiz,Nadiya V. Shapovalova,Clifford R. Slaughterbeck,Josef Sulc,Michael Tieu,Amy Torkelson,Herman Tung,Nasmil Valera Cuevas,Katherine Wadhwani,Katelyn R. Ward,Boaz P. Levi,Colin Farrell,Carol L. Thompson,Shoaib Mufti,Chelsea M. Pagan,Lauren Kruse,Nick Dee,Susan M. Sunkin,Luke A. Esposito,Michael Hawrylycz,Jack Waters,Lydia Ng,Kimberly A. Smith,Bosiljka Tasic,Xiaowei Zhuang,Hongkui Zeng +71 more
TL;DR: The cell type atlas for the whole adult mouse brain was created based on the combination of two singlecell-level, whole-brain-scale datasets: a single-cell RNA-sequencing (scRNA-seq) dataset of ∼7 million cells profiled, and a spatially resolved transcriptomic dataset with ∼4.3 million cells using MERFISH as discussed by the authors .
Posted ContentDOI
Epigenomic complexity of the human brain revealed by single-cell DNA methylomes and 3D genome structures
Wei Tian,Jingtian Zhou,Anna Bartlett,Qiurui Zeng,Huan Liu,Rosa Castanon,M. W. Kenworthy,Jordan Altshul,Cynthia Valadon,Andrew Aldridge,Joseph R. Nery,Huaming Chen,Jiaying Xu,Nicholas D. Johnson,Jacinta Lucero,Julia K. Osteen,Nora Emerson,Jon Rink,Jasper Lee,Yang Eric Li,Kimberly Siletti,Michelle Liem,Naomi Claffey,Caz O'Connor,Anna Marie Yanny,Julie Nyhus,Nick Dee,Tamara Casper,Nadiya V. Shapovalova,Daniel Hirschstein,Rebecca D. Hodge,Boaz P. Levi,C. Dirk Keene,Sten Linnarsson,Ed S. Lein,Bing Ren,M. Margarita Behrens,Joseph R. Ecker +37 more
TL;DR: In this article , the authors comprehensively examined human brain cell epigenomes by probing DNA methylation and chromatin conformation at single-cell resolution in over 500,000 cells from 46 brain regions.
Posted ContentDOI
Integrated multimodal cell atlas of Alzheimer’s disease
Mariano I. Gabitto,Kyle J. Travaglini,Victoria M Rachleff,Eitan S. Kaplan,Brian Long,Jeanelle Ariza,Yi Ding,Joseph T. Mahoney,Nick Dee,Jeff Goldy,Erica J. Melief,Krissy Brouner,Jazmin Campos,John S. Campos,Ambrose James Carr,Tamara Casper,Rushil Chakrabarty,Michael Clark,Jonah Cool,Rachel A. Dalley,Martin Darvas,Songlin Ding,Tim A. Dolbeare,Christine L. Mac Donald,Tom Egdorf,Luke A. Esposito,R. Ferrer,Rohan Gala,Amanda Gary,Jessica Gloe,Nathaniel Guilford,Junitta Guzman,Daniel Hirschstein,Windy Ho,Nelson Johansen,Brian E. Kalmbach,Lisa Keene,Michael Kunst,Brian Lee,Zoe Maltzer,Naomi Martin,Rachel A. McCue,Delissa McMillen,Emma Meyerdierks,Kelly Meyers,Tyler Mollenkopf,Amber Nolan,Julie Nyhus,Paul A Olsen,Nicholas D. Peña,Thanh-Hau T Pham,Christina A. Pom,Nadia Postupna,Augustin Ruiz,Aimee Schantz,Nadiya V. Shapovalova,Staci A. Sorensen,Brian Staats,M. Sullivan,Susan M. Sunkin,Carol L. Thompson,Michael Tieu,Jonathan T. Ting,Amy Torkelson,Tracy Tran,Ming-Qiang Wang,Jack Waters,Angela M. Wilson,D.L. Haynor,Nicole M. Gatto,Suman Jayadev,Shoaib Mufti,Lydia Ng,Shubhabrata Mukherjee,Paul K. Crane,Caitlin S. Latimer,Boaz P. Levi,Kimberly A. Smith,Jennie Close,Jeremy A. Miller,Rebecca D. Hodge,Eric B. Larson,Thomas J. Grabowski,Michael Hawrylycz,C. Dirk Keene,Ed S. Lein +85 more
TL;DR: In this article , the authors harnessed single cell and spatial genomics tools and knowledge from the BRAIN Initiative Cell Census Network to understand the impact of disease progression on middle temporal gyrus cell types.