H
H. Eka D. Suchiman
Researcher at Leiden University Medical Center
Publications - 68
Citations - 6361
H. Eka D. Suchiman is an academic researcher from Leiden University Medical Center. The author has contributed to research in topics: DNA methylation & Cartilage. The author has an hindex of 31, co-authored 57 publications receiving 5278 citations. Previous affiliations of H. Eka D. Suchiman include University of California, Los Angeles & VU University Amsterdam.
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Journal ArticleDOI
Identification of seven loci affecting mean telomere length and their association with disease
Veryan Codd,Christopher P. Nelson,Eva Albrecht,Massimo Mangino,Joris Deelen,Jessica L. Buxton,Jouke-Jan Hottenga,Krista Fischer,Tõnu Esko,Ida Surakka,Linda Broer,Dale R. Nyholt,Irene Mateo Leach,Perttu Salo,Sara Hägg,Mary K. Matthews,Jutta Palmen,Giuseppe Danilo Norata,Paul F. O'Reilly,Danish Saleheen,Najaf Amin,Anthony J. Balmforth,Marian Beekman,Rudolf A. de Boer,Stefan Böhringer,Peter S. Braund,Paul Burton,Anton J. M. de Craen,Matthew Denniff,Yanbin Dong,Konstantinos Douroudis,Elena Dubinina,Johan G. Eriksson,Katia Garlaschelli,Dehuang Guo,Anna-Liisa Hartikainen,Anjali K. Henders,Jeanine J. Houwing-Duistermaat,Laura Kananen,Lennart C. Karssen,Johannes Kettunen,Norman Klopp,Vasiliki Lagou,Elisabeth M. van Leeuwen,Pamela A. F. Madden,Reedik Mägi,Patrik K. E. Magnusson,Satu Männistö,Satu Männistö,Mark I. McCarthy,Mark I. McCarthy,Mark I. McCarthy,Sarah E. Medland,Evelin Mihailov,Grant W. Montgomery,Ben A. Oostra,Aarno Palotie,Annette Peters,Helen Pollard,Anneli Pouta,Anneli Pouta,Inga Prokopenko,Samuli Ripatti,Veikko Salomaa,Veikko Salomaa,H. Eka D. Suchiman,Ana M. Valdes,Niek Verweij,Ana Viñuela,Xiaoling Wang,Xiaoling Wang,H-Erich Wichmann,Elisabeth Widen,Gonneke Willemsen,Margaret J. Wright,Kai Xia,Xiangjun Xiao,Dirk J. van Veldhuisen,Alberico L. Catapano,Martin D. Tobin,Alistair S. Hall,Alexandra I. F. Blakemore,Wiek H. van Gilst,Haidong Zhu,Haidong Zhu,Jeanette Erdmann,Muredach P. Reilly,Sekar Kathiresan,Sekar Kathiresan,Heribert Schunkert,Philippa J. Talmud,Nancy L. Pedersen,Markus Perola,Markus Perola,Markus Perola,Willem H. Ouwehand,Jaakko Kaprio,Nicholas G. Martin,Cornelia M. van Duijn,Iiris Hovatta,Iiris Hovatta,Christian Gieger,Andres Metspalu,Dorret I. Boomsma,Marjo-Riitta Järvelin,P. Eline Slagboom,John R Thompson,Tim D. Spector,Pim van der Harst,Nilesh J. Samani,Nilesh J. Samani +110 more
TL;DR: In this paper, a genome-wide meta-analysis of 37,684 individuals with replication of selected variants in an additional 10,739 individuals was carried out to identify seven loci, including five new loci associated with mean leukocyte telomere length (LTL) (P < 5 × 10−8).
Journal ArticleDOI
Whole-genome sequence variation, population structure and demographic history of the Dutch population
Laurent C. Francioli,Androniki Menelaou,Sara L. Pulit,Freerk van Dijk,Pier Francesco Palamara,Clara C. Elbers,Pieter B. Neerincx,Kai Ye,Kai Ye,Victor Guryev,Wigard P. Kloosterman,Patrick Deelen,Abdel Abdellaoui,Elisabeth M. van Leeuwen,Mannis van Oven,Martijn Vermaat,Mingkun Li,Jeroen F. J. Laros,Lennart C. Karssen,Alexandros Kanterakis,Najaf Amin,Jouke-Jan Hottenga,Eric-Wubbo Lameijer,Mathijs Kattenberg,Martijn Dijkstra,Heorhiy Byelas,Jessica van Setten,Barbera D. C. van Schaik,Jan Bot,Isaac J. Nijman,Ivo Renkens,Tobias Marschall,Alexander Schönhuth,Jayne Y. Hehir-Kwa,Robert E. Handsaker,Robert E. Handsaker,Paz Polak,Mashaal Sohail,Mashaal Sohail,Dana Vuzman,Fereydoun Hormozdiari,David van Enckevort,Hailiang Mei,Vyacheslav Koval,Matthijs Moed,K. Joeri van der Velde,Fernando Rivadeneira,Fernando Rivadeneira,Fernando Rivadeneira,Karol Estrada,Carolina Medina-Gomez,Aaron Isaacs,Aaron Isaacs,Steven A. McCarroll,Marian Beekman,Anton J. M. de Craen,H. Eka D. Suchiman,Albert Hofman,Ben A. Oostra,André G. Uitterlinden,Gonneke Willemsen,Mathieu Platteel,Jan H. Veldink,Leonard H. van den Berg,Steven J. Pitts,Shobha Potluri,Purnima Sundar,David R. Cox,David R. Cox,Shamil R. Sunyaev,Johan T. den Dunnen,Mark Stoneking,Peter de Knijff,Manfred Kayser,Qibin Li,Yingrui Li,Yuanping Du,Ruoyan Chen,Hongzhi Cao,Ning Li,Sujie Cao,Jun Wang,Jasper A. Bovenberg,Itsik Pe'er,P. Eline Slagboom,Cornelia M. van Duijn,Dorret I. Boomsma,Gert-Jan B. van Ommen,Paul I.W. de Bakker,Paul I.W. de Bakker,Morris A. Swertz,Cisca Wijmenga +91 more
TL;DR: The Genome of the Netherlands (GoNL) Project is described, in which the whole genomes of 250 Dutch parent-offspring families were sequenced and a haplotype map of 20.4 million single-nucleotide variants and 1.2 million insertions and deletions were constructed.
Identification of seven loci affecting mean telomere length and their association with disease
Veryan Codd,Christopher P. Nelson,Eva Albrecht,Massimo Mangino,Joris Deelen,Jessica L. Buxton,Jouke-Jan Hottenga,Krista Fischer,Tõnu Esko,Ida Surakka,Linda Broer,Dale R. Nyholt,Irene Mateo Leach,Perttu Salo,Sara Hägg,Mary K. Matthews,Jutta Palmen,Giuseppe Danilo Norata,Paul F. O'Reilly,Danish Saleheen,Najaf Amin,Anthony J. Balmforth,Marian Beekman,Rudolf A. de Boer,Stefan Böhringer,Peter S. Braund,Paul Burton,Anton J. M. de Craen,Matthew Denniff,Yanbin Dong,Konstantinos Douroudis,Elena Dubinina,Johan G. Eriksson,Katia Garlaschelli,Dehuang Guo,Anna-Liisa Hartikainen,Anjali K. Henders,Jeanine J. Houwing-Duistermaat,Laura Kananen,Lennart C. Karssen,Johannes Kettunen,Norman Klopp,Vasiliki Lagou,Elisabeth M. van Leeuwen,Pamela A. F. Madden,Reedik Maegi,Patrik K. E. Magnusson,Satu Männistö,Mark I. McCarthy,Sarah E. Medland,Evelin Mihailov,Grant W. Montgomery,Ben A. Oostra,Aarno Palotie,Annette Peters,Helen Pollard,Anneli Pouta,Inga Prokopenko,Samuli Ripatti,Veikko Salomaa,H. Eka D. Suchiman,Ana M. Valdes,Niek Verweij,Ana Viñuela,Xiaoling Wang,H-Erich Wichmann,Elisabeth Widen,Gonneke Willemsen,Margaret J. Wright,Kai Xia,Xiangjun Xiao,Dirk J. van Veldhuisen,Alberico L. Catapano,Martin D. Tobin,Alistair S. Hall,Alexandra I. F. Blakemore,Wiek H. van Gilst,Haidong Zhu,Jeanette Erdmann,Muredach P. Reilly,Sekar Kathiresan,Heribert Schunkert,Philippa J. Talmud,Nancy L. Pedersen,Markus Perola,Willem H. Ouwehand,Jaakko Kaprio,Nicholas G. Martin,Cornelia M. van Duijn,Iris Hovatta,Christian Gieger,Andres Metspalu,Dorret I. Boomsma,Marjo-Riitta Järvelin,P. Eline Slagboom,John R Thompson,Tim D. Spector,Pim van der Harst,Nilesh J. Samani +98 more
TL;DR: In this article, a genome-wide meta-analysis of 37,684 individuals with replication of selected variants in an additional 10,739 individuals was carried out to identify seven loci, including five new loci associated with mean leukocyte telomere length (LTL).
Journal ArticleDOI
Disease variants alter transcription factor levels and methylation of their binding sites.
Marc Jan Bonder,René Luijk,Daria V. Zhernakova,Matthijs Moed,Patrick Deelen,Martijn Vermaat,Maarten van Iterson,Freerk van Dijk,Michiel van Galen,Jan Bot,Roderick C. Slieker,P. Mila Jhamai,Michael Verbiest,H. Eka D. Suchiman,Marijn Verkerk,Ruud van der Breggen,Jeroen van Rooij,Nico Lakenberg,Wibowo Arindrarto,Szymon M. Kielbasa,Iris Jonkers,Peter van ‘t Hof,Irene Nooren,Marian Beekman,Joris Deelen,Diana van Heemst,Alexandra Zhernakova,Ettje F. Tigchelaar,Morris A. Swertz,Albert Hofman,André G. Uitterlinden,René Pool,Jenny van Dongen,Jouke J. Hottenga,Coen D.A. Stehouwer,Carla J.H. van der Kallen,Casper G. Schalkwijk,Leonard H. van den Berg,Erik W. van Zwet,Hailiang Mei,Yang Li,Mathieu Lemire,Thomas J. Hudson,Thomas J. Hudson,P. Eline Slagboom,Cisca Wijmenga,Jan H. Veldink,Marleen M.J. van Greevenbroek,Cornelia M. van Duijn,Dorret I. Boomsma,Aaron Isaacs,Aaron Isaacs,Rick Jansen,Joyce B. J. van Meurs,Peter A C 't Hoen,Lude Franke,Bastiaan T. Heijmans +56 more
TL;DR: It is shown that disease-associated variants have widespread effects on DNA methylation in trans that likely reflect differential occupancy of trans binding sites by cis-regulated transcription factors.
Journal ArticleDOI
Genetic and environmental influences interact with age and sex in shaping the human methylome
Jenny van Dongen,Michel G. Nivard,Gonneke Willemsen,Jouke-Jan Hottenga,Quinta Helmer,Conor V. Dolan,Erik A. Ehli,Gareth E. Davies,Maarten van Iterson,Charles E. Breeze,Stephan Beck,H. Eka D. Suchiman,Rick Jansen,Joyce B. J. van Meurs,Bastiaan T. Heijmans,P. Eline Slagboom,Dorret I. Boomsma +16 more
TL;DR: These findings demonstrate that the catalogue holds valuable information on locations in the genome where methylation variation between people may reflect disease-relevant environmental exposures or genetic variation, and illustrates the impact of genome and environment across the lifespan at methylation sites associated with metabolic traits, smoking and ageing.