J
Jette Bornholdt
Researcher at University of Copenhagen
Publications - 37
Citations - 3792
Jette Bornholdt is an academic researcher from University of Copenhagen. The author has contributed to research in topics: Gene & Enhancer. The author has an hindex of 20, co-authored 35 publications receiving 3236 citations.
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Journal ArticleDOI
An atlas of active enhancers across human cell types and tissues
Robin Andersson,Claudia Gebhard,Irene Miguel-Escalada,Ilka Hoof,Jette Bornholdt,Mette Boyd,Yun Chen,Xiaobei Zhao,Xiaobei Zhao,Christian Schmidl,Takahiro Suzuki,Evgenia Ntini,Erik Arner,Eivind Valen,Eivind Valen,Kang Li,Lucia Schwarzfischer,Dagmar Glatz,Johanna Raithel,Berit Lilje,Nicolas Rapin,Frederik Otzen Bagger,Mette Rose Jørgensen,Peter Refsing Andersen,Nicolas Bertin,Owen J. L. Rackham,A. Maxwell Burroughs,J Kenneth Baillie,Yuri Ishizu,Yuri Shimizu,Erina Furuhata,Shiori Maeda,Yutaka Negishi,Christopher J. Mungall,Terrence F. Meehan,Timo Lassmann,Masayoshi Itoh,Hideya Kawaji,Naoto Kondo,Jun Kawai,Andreas Lennartsson,Carsten O. Daub,Peter Heutink,David A. Hume,Torben Heick Jensen,Harukazu Suzuki,Yoshihide Hayashizaki,Ferenc Müller,Alistair R. R. Forrest,Piero Carninci,Michael Rehli,Albin Sandelin +51 more
TL;DR: It is shown that enhancers share properties with CpG-poor messenger RNA promoters but produce bidirectional, exosome-sensitive, relatively short unspliced RNAs, the generation of which is strongly related to enhancer activity.
Journal ArticleDOI
Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality
Evgenia Ntini,Aino I Järvelin,Jette Bornholdt,Yun Chen,Mette Boyd,Mette Rose Jørgensen,Robin Andersson,Ilka Hoof,Aleks Schein,Aleks Schein,Peter Refsing Andersen,Pia K. Andersen,Pascal Preker,Eivind Valen,Eivind Valen,Xiaobei Zhao,Vicent Pelechano,Lars M. Steinmetz,Albin Sandelin,Torben Heick Jensen +19 more
TL;DR: High-throughput sequencing demonstrates that PROMPTs generally initiate in the antisense direction closely upstream of the transcription start sites (TSSs) of their associated genes.
Journal ArticleDOI
Nuclear stability and transcriptional directionality separate functionally distinct RNA species
Robin Andersson,Peter Refsing Andersen,Eivind Valen,Leighton J. Core,Jette Bornholdt,Mette Boyd,Torben Heick Jensen,Albin Sandelin +7 more
TL;DR: A strategy to systematically categorize human RNAs by their sensitivity to the ribonucleolytic RNA exosome complex and by the nature of their transcription initiation is devised, which is surprisingly effective at correctly classifying annotated transcripts, including lncRNAs of known function.
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Oxidative DNA damage and defence gene expression in the mouse lung after short-term exposure to diesel exhaust particles by inhalation
Lotte Risom,Marianne Dybdahl,Jette Bornholdt,Ulla Vogel,Håkan Wallin,Peter Møller,Steffen Loft +6 more
TL;DR: It is indicated that a single high dose of DEP generates 8-oxodG in lung tissue, whereas the same dose inhaled as four low-exposures may up-regulate the antioxidative defence system and protect against generation of 8-OxodG.
Journal ArticleDOI
DNA adduct formation and oxidative stress in colon and liver of Big Blue rats after dietary exposure to diesel particles.
Marianne Dybdahl,Lotte Risom,Peter Møller,Herman Autrup,Håkan Wallin,Ulla Vogel,Jette Bornholdt,Bahram Daneshvar,Lars O. Dragsted,Allan Weimann,Henrik E. Poulsen,Steffen Loft +11 more
TL;DR: The data indicate that gastrointestinal exposure to DEP induces DNA adducts and oxidative stress resulting in DNA strand breaks, enhanced repair capacity of oxidative base damage, apoptosis and protein oxidation in colon mucosa cells and liver.