L
Lumi Viljakainen
Researcher at University of Oulu
Publications - 23
Citations - 2364
Lumi Viljakainen is an academic researcher from University of Oulu. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 15, co-authored 19 publications receiving 2207 citations. Previous affiliations of Lumi Viljakainen include Cornell University.
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Journal ArticleDOI
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.
John H. Werren,Stephen Richards,Christopher A. Desjardins,Oliver Niehuis,Jürgen Gadau,John K. Colbourne,Leo W. Beukeboom,Claude Desplan,Christine G. Elsik,Cornelis J. P. Grimmelikhuijzen,Paul Kitts,Jeremy A. Lynch,Terence Murphy,Deodoro C. S. G. Oliveira,Christopher D. Smith,Christopher D. Smith,Louis De Van Zande,Kim C. Worley,Evgeny M. Zdobnov,Maarten Aerts,Stefan Albert,Víctor Hugo Anaya,Juan Manuel Anzola,Angel Roberto Barchuk,Susanta K. Behura,Agata N. Bera,May R. Berenbaum,Rinaldo C. Bertossa,Márcia Maria Gentile Bitondi,Seth R. Bordenstein,Peer Bork,Erich Bornberg-Bauer,Marleen Brunain,Giuseppe Cazzamali,Lesley S. Chaboub,Joseph Chacko,Dean Chavez,Christopher P. Childers,Jeong Hyeon Choi,Michael E. Clark,Charles Claudianos,Rochelle A. Clinton,Andrew Cree,Alexandre S. Cristino,Alexandre S. Cristino,Phat M. Dang,Alistair C. Darby,Dirk C. de Graaf,Bart Devreese,Huyen Dinh,Rachel Edwards,Navin Elango,Eran Elhaik,Olga Ermolaeva,Jay D. Evans,Sylvain Forêt,Gerald R. Fowler,Daniel Gerlach,Joshua D. Gibson,Donald G. Gilbert,Dan Graur,Stefan Gründer,Darren E. Hagen,Yi Han,Frank Hauser,Da Hultmark,Henry C. Hunter,Gregory D. D. Hurst,Shalini N. Jhangian,Huaiyang Jiang,Reed M. Johnson,Andrew K. Jones,Thomas Junier,Tatsuhiko Kadowaki,A. Kamping,Yuri Kapustin,Bobak D. Kechavarzi,Jaebum Kim,Jay Kim,Boris Kiryutin,T. Koevoets,Christie Kovar,Evgenia V. Kriventseva,Robert Kucharski,Heewook Lee,Sandra L. Lee,Kristin Lees,Lora Lewis,David W. Loehlin,John M. Logsdon,Jacqueline Lopez,Ryan J. Lozado,Donna Maglott,Ryszard Maleszka,Anoop Mayampurath,Danielle J. Mazur,Marcella A. McClure,Andrew D. Moore,Margaret Morgan,Jean Muller,Monica Munoz-Torres,Donna M. Muzny,Lynne V. Nazareth,Susanne Neupert,Ngoc Nguyen,Francis M. F. Nunes,John G. Oakeshott,Geoffrey Okwuonu,Bart A. Pannebakker,Vikas Pejaver,Zuogang Peng,Stephen C. Pratt,Reinhard Predel,Ling Ling Pu,Hilary Ranson,Rhitoban Raychoudhury,Andreas Rechtsteiner,Andreas Rechtsteiner,Justin T. Reese,Jeffrey G. Reid,Megan Riddle,I. I. Hugh M Robertson,Jeanne Romero-Severson,Miriam I. Rosenberg,Timothy B. Sackton,David B. Sattelle,Helge Schlüns,Thomas Schmitt,Martina Schneider,Andreas Schüler,Andrew M. Schurko,David M. Shuker,Zilá Luz Paulino Simões,Saurabh Sinha,Zachary Smith,Victor V. Solovyev,Alexandre Souvorov,Andreas Springauf,Elisabeth Stafflinger,Deborah E. Stage,Deborah E. Stage,Mario Stanke,Yoshiaki Tanaka,Arndt Telschow,Carol Trent Selina Vattathil,I. I. Eveline C Verhulst,Lumi Viljakainen,Kevin W. Wanner,Robert M. Waterhouse,James B. Whitfield,Timothy E. Wilkes,Michael Williamson,Judith H. Willis,Florian Wolschin,Stefan Wyder,Stefan Wyder,Takuji Yamada,Soojin V. Yi,Courtney N. Zecher,Lan Zhang,Lan Zhang,Richard A. Gibbs +161 more
TL;DR: Key findings include the identification of a functional DNA methylation tool kit; hymenopteran-specific genes including diverse venoms; lateral gene transfers among Pox viruses, Wolbachia, and Nasonia; and the rapid evolution of genes involved in nuclear-mitochondrial interactions that are implicated in speciation.
Journal ArticleDOI
Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile).
Christopher D. Smith,Aleksey V. Zimin,Carson Holt,Ehab Abouheif,Richard Benton,Elizabeth Cash,Vincent Croset,Cameron R. Currie,Eran Elhaik,Christine G. Elsik,Marie-Julie Favé,Vilaiwan M. Fernandes,Juergen Gadau,Joshua D. Gibson,Dan Graur,Kirk J. Grubbs,Darren E. Hagen,Martin Helmkampf,Jo Anne Holley,Hao Hu,Ana Sofia Ibarraran Viniegra,Brian R. Johnson,Reed M. Johnson,Abderrahman Khila,Jay W. Kim,Joseph G. Laird,Kaitlyn A. Mathis,Joseph A. Moeller,Monica Munoz-Torres,Marguerite C. Murphy,Rin Nakamura,Surabhi Nigam,Rick P. Overson,Jennifer E. Placek,Rajendhran Rajakumar,Justin T. Reese,Hugh M. Robertson,Chris Smith,Andrew V. Suarez,Garret Suen,Elissa L. Suhr,Shu Tao,Candice W. Torres,Ellen van Wilgenburg,Lumi Viljakainen,Kimberly K. O. Walden,Alexander L. Wild,Mark Yandell,James A. Yorke,Neil D. Tsutsui +49 more
TL;DR: The draft genome sequence of a particularly widespread and well-studied species, the invasive Argentine ant, is reported, which was accomplished using a combination of 454 and Illumina sequencing and community-based funding rather than federal grant support.
Journal ArticleDOI
Draft genome of the red harvester ant Pogonomyrmex barbatus
Chris Smith,Christopher D. Smith,Hugh M. Robertson,Martin Helmkampf,Aleksey V. Zimin,Mark Yandell,Carson Holt,Hao Hu,Ehab Abouheif,Richard Benton,Elizabeth Cash,Vincent Croset,Cameron R. Currie,Eran Elhaik,Christine G. Elsik,Marie-Julie Favé,Vilaiwan M. Fernandes,Joshua D. Gibson,Dan Graur,Wulfila Gronenberg,Kirk J. Grubbs,Darren E. Hagen,Ana Sofia Ibarraran Viniegra,Brian R. Johnson,Reed M. Johnson,Abderrahman Khila,Jay W. Kim,Kaitlyn A. Mathis,Monica Munoz-Torres,Marguerite C. Murphy,Julie A. Mustard,Rin Nakamura,Oliver Niehuis,Surabhi Nigam,Rick P. Overson,Jennifer E. Placek,Rajendhran Rajakumar,Justin T. Reese,Garret Suen,Shu Tao,Candice W. Torres,Neil D. Tsutsui,Lumi Viljakainen,Florian Wolschin,Jürgen Gadau +44 more
TL;DR: Gene networks involved in generating key differences between the queen and worker castes show signatures of increased methylation and suggest that ants and bees may have independently co-opted the same gene regulatory mechanisms for reproductive division of labor.
Journal ArticleDOI
The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle
Garret Suen,Garret Suen,Clotilde Teiling,Lewyn Li,Carson Holt,Ehab Abouheif,Erich Bornberg-Bauer,Pascal Bouffard,Eric J. Caldera,Elizabeth Cash,Amy Cavanaugh,Amy Cavanaugh,Olgert Denas,Eran Elhaik,Marie-Julie Favé,Jürgen Gadau,Joshua D. Gibson,Dan Graur,Kirk J. Grubbs,Darren E. Hagen,Timothy T. Harkins,Martin Helmkampf,Hao Hu,Brian R. Johnson,Jay W. Kim,Sarah E. Marsh,Joseph A. Moeller,Joseph A. Moeller,Monica Munoz-Torres,Marguerite C. Murphy,Meredith C. Naughton,Surabhi Nigam,Rick P. Overson,Rajendhran Rajakumar,Justin T. Reese,Jarrod J. Scott,Jarrod J. Scott,Jarrod J. Scott,Chris Smith,Shu Tao,Neil D. Tsutsui,Lumi Viljakainen,Lothar Wissler,Mark Yandell,Fabian Zimmer,R. James Taylor,Steven C. Slater,Steven C. Slater,Sandra W. Clifton,Wesley C. Warren,Christine G. Elsik,Christopher D. Smith,George M. Weinstock,Nicole M. Gerardo,Cameron R. Currie,Cameron R. Currie,Cameron R. Currie +56 more
TL;DR: Following recent reports of genome sequences from other insects that engage in symbioses with beneficial microbes, the A. cephalotes genome provides new insights into the symbiotic lifestyle of this ant and advances the understanding of host–microbe symbioss.
Journal ArticleDOI
Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality
Daniel F. Simola,Lothar Wissler,Greg Donahue,Robert M. Waterhouse,Martin Helmkampf,Julien Roux,Sanne Nygaard,Karl M. Glastad,Darren E. Hagen,Lumi Viljakainen,Justin T. Reese,Brendan G. Hunt,Dan Graur,Eran Elhaik,Evgenia V. Kriventseva,Jiayu Wen,Brian J. Parker,Elizabeth Cash,Eyal Privman,Christopher P. Childers,Monica Munoz-Torres,Jacobus J. Boomsma,Erich Bornberg-Bauer,Cameron R. Currie,Christine G. Elsik,Garret Suen,Michael A. D. Goodisman,Laurent Keller,Jürgen Liebig,Alan Rawls,Danny Reinberg,Christopher D. Smith,Chris Smith,Neil D. Tsutsui,Yannick Wurm,Evgeny M. Zdobnov,Shelley L. Berger,Jürgen Gadau +37 more
TL;DR: While the "socio-genomes" of ants and the honeybee are broadly characterized by a pervasive pattern of divergence in gene composition and regulation, they preserve lineage-specific regulatory features linked to eusociality, it is proposed that changes in gene regulation played a key role in the origins of insect eussociality.