J
Jeremy A. Lynch
Researcher at University of Illinois at Chicago
Publications - 59
Citations - 3902
Jeremy A. Lynch is an academic researcher from University of Illinois at Chicago. The author has contributed to research in topics: Nasonia & Nasonia vitripennis. The author has an hindex of 21, co-authored 56 publications receiving 3481 citations. Previous affiliations of Jeremy A. Lynch include University of Illinois at Urbana–Champaign & New York University.
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Journal ArticleDOI
The genome of the model beetle and pest Tribolium castaneum.
Stephen Richards,Richard A. Gibbs,George M. Weinstock,Susan J. Brown,Robin Denell,Richard W. Beeman,R. A. Gibbs,Gregor Bucher,Markus Friedrich,Cornelis J. P. Grimmelikhuijzen,Martin Klingler,Marcé D. Lorenzen,Siegfried Roth,Reinhard Schröder,Diethard Tautz,Evgeny M. Zdobnov,Donna M. Muzny,Tony Attaway,Stephanie Bell,Christian J. Buhay,Mimi N. Chandrabose,Dean Chavez,Kerstin P. Clerk-Blankenburg,Andrew Cree,Marvin Diep Dao,Clay Davis,Joseph Chacko,Huyen Dinh,Shannon Dugan-Rocha,Gerald R. Fowler,Toni T. Garner,Jeffrey Garnes,Andreas Gnirke,Alica Hawes,Judith Hernandez,Sandra Hines,Michael Holder,Jennifer Hume,Shalini N. Jhangiani,Vandita Joshi,Ziad Khan,LaRonda Jackson,Christie Kovar,Andrea Kowis,Sandra L. Lee,Lora Lewis,Jon Margolis,Margaret Morgan,Lynne V. Nazareth,Ngoc Nguyen,Geoffrey Okwuonu,David A. Parker,San Juana Ruiz,Jireh Santibanez,Joël Savard,Steven E. Scherer,Brian W. Schneider,Erica Sodergren,Selina Vattahil,Donna Villasana,Courtney Sherell White,Rita A. Wright,Yoonseong Park,Jeff Lord,Brenda Oppert,Susan J Brown,Liangjiang Wang,George Weinstock,Yue Liu,Kim C. Worley,Christine G. Elsik,Justin T. Reese,Eran Elhaik,Giddy Landan,Dan Graur,Peter Arensburger,Peter W. Atkinson,Jim Beidler,Jeffery P. Demuth,Douglas W. Drury,Yu Zhou Du,Haruhiko Fujiwara,Vincenza Maselli,Mizuko Osanai,Hugh M. Robertson,Zhijian Tu,Jianjun Wang,Suzhi Wang,Henry Song,Lan Zhang,Doreen Werner,Mario Stanke,Burkhard Morgenstern,Victor V. Solovyev,Peter Kosarev,Garth Brown,Hsiu Chuan Chen,Olga Ermolaeva,Wratko Hlavina,Yuri Kapustin,Boris Kiryutin,Paul Kitts,Donna Maglott,Kim D. Pruitt,Victor Sapojnikov,Alexandre Souvorov,Aaron J. Mackey,Robert M. Waterhouse,Stefan Wyder,Evgenia V. Kriventseva,Tatsuhiko Kadowaki,Peer Bork,Manuel Aranda,Riyue Bao,Anke Beermann,Nicola Berns,Renata Bolognesi,François Bonneton,Daniel Bopp,Thomas Butts,Arnaud Chaumot,Robin E. Denell,David E. K. Ferrier,Cassondra M. Gordon,Marek Jindra,Que Lan,H. Michael G. Lattorff,Vincent Laudet,Cornelia Von Levetsow,Zhenyi Liu,Rebekka Lutz,Jeremy A. Lynch,Rodrigo Nunes da Fonseca,Nico Posnien,Rolf Reuter,Johannes B. Schinko,Christian Schmitt,Michael Schoppmeier,Teresa D. Shippy,Franck Simonnet,Henrique Marques-Souza,Yoshinori Tomoyasu,Jochen Trauner,Maurijn van der Zee,Michel Vervoort,Nadine Wittkopp,Ernst A. Wimmer,Xiaoyun Yang,Andrew K. Jones,David B. Sattelle,Paul R. Ebert,David R. Nelson,Jeffrey G. Scott,Subbaratnam Muthukrishnan,Karl J. Kramer,Yasuyuki Arakane,Qingsong Zhu,David G. Hogenkamp,Radhika Dixit,Haobo Jiang,Zhen Zou,Jeremy L. Marshall,Elena N. Elpidina,K.S. Vinokurov,Cris Oppert,Jay D. Evans,Zhiqiang Lu,Picheng Zhao,Niranji Sumathipala,Boran Altincicek,Andreas Vilcinskas,Michael Williams,Dan Hultmark,Charles Hetru,Frank Hauser,Giuseppe Cazzamali,Michael Williamson,Bin Li,Yoshiaki Tanaka,Reinhard Predel,Susanne Neupert,Joachim Schachtner,Peter Verleyen,Florian Raible,Kimberly K. O. Walden,Sergio Angeli,Sylvain Forêt,Stefan Schuetz,Ryszard Maleszka,Sherry Miller,Daniela Grossmann +190 more
TL;DR: Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural products.
Journal ArticleDOI
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.
John H. Werren,Stephen Richards,Christopher A. Desjardins,Oliver Niehuis,Jürgen Gadau,John K. Colbourne,Leo W. Beukeboom,Claude Desplan,Christine G. Elsik,Cornelis J. P. Grimmelikhuijzen,Paul Kitts,Jeremy A. Lynch,Terence Murphy,Deodoro C. S. G. Oliveira,Christopher D. Smith,Christopher D. Smith,Louis De Van Zande,Kim C. Worley,Evgeny M. Zdobnov,Maarten Aerts,Stefan Albert,Víctor Hugo Anaya,Juan Manuel Anzola,Angel Roberto Barchuk,Susanta K. Behura,Agata N. Bera,May R. Berenbaum,Rinaldo C. Bertossa,Márcia Maria Gentile Bitondi,Seth R. Bordenstein,Peer Bork,Erich Bornberg-Bauer,Marleen Brunain,Giuseppe Cazzamali,Lesley S. Chaboub,Joseph Chacko,Dean Chavez,Christopher P. Childers,Jeong Hyeon Choi,Michael E. Clark,Charles Claudianos,Rochelle A. Clinton,Andrew Cree,Alexandre S. Cristino,Alexandre S. Cristino,Phat M. Dang,Alistair C. Darby,Dirk C. de Graaf,Bart Devreese,Huyen Dinh,Rachel Edwards,Navin Elango,Eran Elhaik,Olga Ermolaeva,Jay D. Evans,Sylvain Forêt,Gerald R. Fowler,Daniel Gerlach,Joshua D. Gibson,Donald G. Gilbert,Dan Graur,Stefan Gründer,Darren E. Hagen,Yi Han,Frank Hauser,Da Hultmark,Henry C. Hunter,Gregory D. D. Hurst,Shalini N. Jhangian,Huaiyang Jiang,Reed M. Johnson,Andrew K. Jones,Thomas Junier,Tatsuhiko Kadowaki,A. Kamping,Yuri Kapustin,Bobak D. Kechavarzi,Jaebum Kim,Jay Kim,Boris Kiryutin,T. Koevoets,Christie Kovar,Evgenia V. Kriventseva,Robert Kucharski,Heewook Lee,Sandra L. Lee,Kristin Lees,Lora Lewis,David W. Loehlin,John M. Logsdon,Jacqueline Lopez,Ryan J. Lozado,Donna Maglott,Ryszard Maleszka,Anoop Mayampurath,Danielle J. Mazur,Marcella A. McClure,Andrew D. Moore,Margaret Morgan,Jean Muller,Monica Munoz-Torres,Donna M. Muzny,Lynne V. Nazareth,Susanne Neupert,Ngoc Nguyen,Francis M. F. Nunes,John G. Oakeshott,Geoffrey Okwuonu,Bart A. Pannebakker,Vikas Pejaver,Zuogang Peng,Stephen C. Pratt,Reinhard Predel,Ling Ling Pu,Hilary Ranson,Rhitoban Raychoudhury,Andreas Rechtsteiner,Andreas Rechtsteiner,Justin T. Reese,Jeffrey G. Reid,Megan Riddle,I. I. Hugh M Robertson,Jeanne Romero-Severson,Miriam I. Rosenberg,Timothy B. Sackton,David B. Sattelle,Helge Schlüns,Thomas Schmitt,Martina Schneider,Andreas Schüler,Andrew M. Schurko,David M. Shuker,Zilá Luz Paulino Simões,Saurabh Sinha,Zachary Smith,Victor V. Solovyev,Alexandre Souvorov,Andreas Springauf,Elisabeth Stafflinger,Deborah E. Stage,Deborah E. Stage,Mario Stanke,Yoshiaki Tanaka,Arndt Telschow,Carol Trent Selina Vattathil,I. I. Eveline C Verhulst,Lumi Viljakainen,Kevin W. Wanner,Robert M. Waterhouse,James B. Whitfield,Timothy E. Wilkes,Michael Williamson,Judith H. Willis,Florian Wolschin,Stefan Wyder,Stefan Wyder,Takuji Yamada,Soojin V. Yi,Courtney N. Zecher,Lan Zhang,Lan Zhang,Richard A. Gibbs +161 more
TL;DR: Key findings include the identification of a functional DNA methylation tool kit; hymenopteran-specific genes including diverse venoms; lateral gene transfers among Pox viruses, Wolbachia, and Nasonia; and the rapid evolution of genes involved in nuclear-mitochondrial interactions that are implicated in speciation.
Journal ArticleDOI
Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle–plant interface
Duane D. McKenna,Erin D. Scully,Yannick Pauchet,Kelli Hoover,Roy Kirsch,Scott M. Geib,Robert F. Mitchell,Robert F. Mitchell,Robert M. Waterhouse,Robert M. Waterhouse,Seung-Joon Ahn,Deanna Arsala,Joshua B. Benoit,Heath Blackmon,Tiffany Bledsoe,Julia H. Bowsher,André Busch,Bernarda Calla,Hsu Chao,Anna K. Childers,Christopher P. Childers,Dave J. Clarke,Lorna B Cohen,Jeffery P. Demuth,Huyen Dinh,Harshavardhan Doddapaneni,Amanda Dolan,Jian J. Duan,Shannon Dugan,Markus Friedrich,Karl M. Glastad,Michael A. D. Goodisman,Stephanie Haddad,Yi Han,Daniel S.T. Hughes,Panagiotis Ioannidis,J. Spencer Johnston,Jeffery W. Jones,Leslie A. Kuhn,David R. Lance,Chien Yueh Lee,Chien Yueh Lee,Sandra L. Lee,Han Lin,Han Lin,Jeremy A. Lynch,Armin P. Moczek,Shwetha C. Murali,Donna M. Muzny,David R. Nelson,Subba Reddy Palli,Kristen A. Panfilio,Daniel Pers,Monica F. Poelchau,Honghu Quan,Jiaxin Qu,Ann M. Ray,Joseph P. Rinehart,Hugh M. Robertson,Richard L. Roehrdanz,Andrew J. Rosendale,Seunggwan Shin,Christian Silva,Alex S. Torson,Iris M. Vargas Jentzsch,John H. Werren,Kim C. Worley,George D. Yocum,Evgeny M. Zdobnov,Richard A. Gibbs,Stephen Richards +70 more
TL;DR: Amplification and functional divergence of genes associated with specialized feeding on plants, including genes originally obtained via horizontal gene transfer from fungi and bacteria, contributed to the addition, expansion, and enhancement of the metabolic repertoire of the Asian longhorned beetle and to a lesser degree, other phytophagous insects.
Journal ArticleDOI
Localized maternal orthodenticle patterns anterior and posterior in the long germ wasp Nasonia.
TL;DR: It is shown that Nasonia otd maternal mRNA is localized at both poles of the embryo, and resulting protein gradients pattern both poles, which means that localized NasonIA otd has two major roles that allow long germ development.
Journal ArticleDOI
A method for parental RNA interference in the wasp Nasonia vitripennis
Jeremy A. Lynch,Claude Desplan +1 more
TL;DR: A protocol for parental RNA interference (pRNAi) in N. vitripennis entails injecting pupae with double-stranded RNA, allowing the injected wasps to eclose and examining the progeny for developmental defects.