M
Marc Vaudel
Researcher at University of Bergen
Publications - 102
Citations - 4290
Marc Vaudel is an academic researcher from University of Bergen. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 30, co-authored 87 publications receiving 3331 citations. Previous affiliations of Marc Vaudel include Haukeland University Hospital & Leibniz Institute for Neurobiology.
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Journal ArticleDOI
The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways.
Julia M. Burkhart,Marc Vaudel,Stepan Gambaryan,Sonja Radau,Ulrich Walter,Lennart Martens,Lennart Martens,Jörg Geiger,Albert Sickmann,Albert Sickmann,René P. Zahedi +10 more
TL;DR: The proteome of platelets highly purified from fresh blood donations is examined, using elaborate protocols to ensure negligible contamination by leukocytes, erythrocytes, and plasma, and indicates the feasibility of differential and comprehensive proteome analyses from small blood donations.
Journal ArticleDOI
PeptideShaker enables reanalysis of MS-derived proteomics data sets
Marc Vaudel,Julia M. Burkhart,René P. Zahedi,Eystein Oveland,Frode S. Berven,Albert Sickmann,Lennart Martens,Harald Barsnes +7 more
TL;DR: PeptideShaker is described, a proteomics informatics software that can be used at any stage in the proteomics data cycle for the analysis and interpretation of primary data, enabling data sharing and dissemination and re-analysis of publicly available proteomicsData.
Journal ArticleDOI
SearchGUI: An open‐source graphical user interface for simultaneous OMSSA and X!Tandem searches
TL;DR: A user‐friendly, lightweight and open‐source graphical user interface called SearchGUI is presented, for configuring and running the freely available OMSSA (open mass spectrometry search algorithm) and X!Tandem search engines simultaneously.
Journal ArticleDOI
Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors
Nicole M. Warrington,Robin N Beaumont,Momoko Horikoshi,Felix R. Day,Øyvind Helgeland,Øyvind Helgeland,Øyvind Helgeland,Charles Laurin,Jonas Bacelis,Shouneng Peng,Ke Hao,Bjarke Feenstra,Andrew R. Wood,Anubha Mahajan,Jessica Tyrrell,Jessica Tyrrell,Neil Robertson,N. William Rayner,N. William Rayner,Zhen Qiao,Gunn-Helen Moen,Gunn-Helen Moen,Marc Vaudel,Carmen J. Marsit,Jia Chen,Michael Nodzenski,Theresia M. Schnurr,Mohammad Hadi Zafarmand,Jonathan P. Bradfield,Niels Grarup,Marjolein N. Kooijman,Ruifang Li-Gao,Frank Geller,Tarunveer S. Ahluwalia,Lavinia Paternoster,Rico Rueedi,Rico Rueedi,Ville Huikari,Jouke-Jan Hottenga,Leo-Pekka Lyytikäinen,Alana Cavadino,Alana Cavadino,Sarah Metrustry,Diana L. Cousminer,Diana L. Cousminer,Ying Wu,Elisabeth Thiering,Carol A. Wang,Christian Theil Have,Natalia Vilor-Tejedor,Peter K. Joshi,Jodie N. Painter,Ioanna Ntalla,Ronny Myhre,Niina Pitkänen,Elisabeth M. van Leeuwen,Raimo Joro,Vasiliki Lagou,Vasiliki Lagou,Rebecca C Richmond,Ana Espinosa,Sheila J. Barton,Hazel Inskip,Hazel Inskip,John W. Holloway,Loreto Santa-Marina,Xavier Estivill,Wei Ang,Julie A. Marsh,Christoph Reichetzeder,Letizia Marullo,Berthold Hocher,Kathryn L. Lunetta,Joanne M. Murabito,Caroline L Relton,Manolis Kogevinas,Leda Chatzi,Catherine Allard,Luigi Bouchard,Luigi Bouchard,Marie-France Hivert,Marie-France Hivert,Ge Zhang,Ge Zhang,Louis J. Muglia,Louis J. Muglia,Jani Heikkinen,Camilla Schmidt Morgen,Antoine H. C. van Kampen,Antoine H. C. van Kampen,Barbera D. C. van Schaik,Frank D. Mentch,Claudia Langenberg,Jian'an Luan,Robert A. Scott,Jing Hua Zhao,Gibran Hemani,Susan M. Ring,Amanda J. Bennett,Kyle J. Gaulton,Kyle J. Gaulton,Juan Fernández-Tajes,Natalie R. van Zuydam,Carolina Medina-Gomez,Hugoline G. de Haan,Frits R. Rosendaal,Zoltán Kutalik,Zoltán Kutalik,Pedro Marques-Vidal,Shikta Das,Gonneke Willemsen,Hamdi Mbarek,Martina Müller-Nurasyid,Marie Standl,Emil V. R. Appel,Cilius Esmann Fonvig,Cæcilie Trier,Catharina E. M. van Beijsterveldt,Mario Murcia,Mariona Bustamante,Sílvia Bonàs-Guarch,David M. Hougaard,Josep M. Mercader,Josep M. Mercader,Josep M. Mercader,Allan Linneberg,Katharina E. Schraut,Penelope A. Lind,Sarah E. Medland,Beverley M. Shields,Bridget A. Knight,Jin-Fang Chai,Kalliope Panoutsopoulou,Meike Bartels,Friman Sánchez,Jakob Stokholm,David Torrents,David Torrents,Rebecca K. Vinding,Sara M. Willems,Mustafa Atalay,Bo L. Chawes,Peter Kovacs,Inga Prokopenko,Inga Prokopenko,Marcus A. Tuke,Hanieh Yaghootkar,Katherine S. Ruth,Samuel E. Jones,Po-Ru Loh,Po-Ru Loh,Anna Murray,Michael N. Weedon,Anke Tönjes,Michael Stumvoll,Kim F. Michaelsen,Aino-Maija Eloranta,Timo A. Lakka,Cornelia M. van Duijn,Wieland Kiess,Antje Körner,Harri Niinikoski,Harri Niinikoski,Katja Pahkala,Olli T. Raitakari,Olli T. Raitakari,Bo Jacobsson,Bo Jacobsson,Eleftheria Zeggini,George Dedoussis,Yik Ying Teo,Seang-Mei Saw,Grant W. Montgomery,Harry Campbell,James F. Wilson,Tanja G. M. Vrijkotte,Martine Vrijheid,Eco J. C. de Geus,M. Geoffrey Hayes,Haja N. Kadarmideen,Jens-Christian Holm,Lawrence J. Beilin,Craig E. Pennell,Joachim Heinrich,Linda S. Adair,Judith B. Borja,Karen L. Mohlke,Johan G. Eriksson,Johan G. Eriksson,Elisabeth Widen,Andrew T. Hattersley,Andrew T. Hattersley,Tim D. Spector,Mika Kähönen,Jorma Viikari,Jorma Viikari,Terho Lehtimäki,Dorret I. Boomsma,Sylvain Sebert,Peter Vollenweider,Thorkild I. A. Sørensen,Thorkild I. A. Sørensen,Hans Bisgaard,Klaus Bønnelykke,Jeff Murray,Mads Melbye,Ellen A. Nohr,Dennis O. Mook-Kanamori,Fernando Rivadeneira,Albert Hofman,Janine F. Felix,Vincent W. V. Jaddoe,Torben Hansen,Charlotta Pisinger,Allan Vaag,Oluf Pedersen,André G. Uitterlinden,Marjo-Riitta Järvelin,Christine Power,Elina Hyppönen,Elina Hyppönen,Denise M. Scholtens,William L. Lowe,George Davey Smith,Nicholas J. Timpson,Andrew P. Morris,Andrew P. Morris,Andrew P. Morris,Nicholas J. Wareham,Hakon Hakonarson,Hakon Hakonarson,Struan F.A. Grant,Timothy M. Frayling,Debbie A Lawlor,Pål R. Njølstad,Pål R. Njølstad,Stefan Johansson,Stefan Johansson,Ken K. Ong,Mark I. McCarthy,Mark I. McCarthy,John R. B. Perry,David M. Evans,David M. Evans,Rachel M. Freathy,Rachel M. Freathy +245 more
TL;DR: An expanded GWAS of birth weight and subsequent analysis using structural equation modeling and Mendelian randomization decomposes maternal and fetal genetic contributions and causal links between birth weight, blood pressure and glycemic traits.
Journal ArticleDOI
BioContainers: an open-source and community-driven framework for software standardization.
Felipe da Veiga Leprevost,Björn Grüning,Saulo Alves Aflitos,Hannes L. Röst,Julian Uszkoreit,Harald Barsnes,Marc Vaudel,Marc Vaudel,Pablo Moreno,Laurent Gatto,Jonas Weber,Mingze Bai,Rafael C. Jimenez,Timo Sachsenberg,Julianus Pfeuffer,Roberto Vera Alvarez,Johannes Griss,Johannes Griss,Alexey I. Nesvizhskii,Yasset Perez-Riverol +19 more
TL;DR: This paper presents BioContainers, an open-source and community-driven framework which provides platform independent executable environments for bioinformatics software, and provides infrastructure and basic guidelines to create, manage and distribute bioInformatics containers with a special focus on omics technologies.