S
Stefanie De Bodt
Researcher at Ghent University
Publications - 35
Citations - 6608
Stefanie De Bodt is an academic researcher from Ghent University. The author has contributed to research in topics: Arabidopsis thaliana & Arabidopsis. The author has an hindex of 28, co-authored 35 publications receiving 5994 citations. Previous affiliations of Stefanie De Bodt include Flanders Institute for Biotechnology.
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Journal ArticleDOI
Genome sequencing and analysis of the model grass Brachypodium distachyon
John P. Vogel,David F. Garvin,Todd C. Mockler,Jeremy Schmutz,Daniel S. Rokhsar,Michael W. Bevan,Kerrie Barry,Susan Lucas,Miranda Harmon-Smith,Kathleen Lail,Hope Tice,Jane Grimwood,Neil McKenzie,Naxin Huo,Yong Q. Gu,Gerard R. Lazo,Olin D. Anderson,Frank M. You,Ming-Cheng Luo,Jan Dvorak,Jonathan M. Wright,Melanie Febrer,Dominika Idziak,Robert Hasterok,Erika Lindquist,Mei Wang,Samuel E. Fox,Henry D. Priest,Sergei A. Filichkin,Scott A. Givan,Douglas W. Bryant,Jeff H. Chang,Haiyan Wu,Wei Wu,An-Ping Hsia,Patrick S. Schnable,Anantharaman Kalyanaraman,Brad Barbazuk,Todd P. Michael,Samuel P. Hazen,Jennifer N. Bragg,Debbie Laudencia-Chingcuanco,Yiqun Weng,Georg Haberer,Manuel Spannagl,Klaus F. X. Mayer,Thomas Rattei,Therese Mitros,Sang-Jik Lee,Jocelyn K. C. Rose,Lukas A. Mueller,Thomas L. York,Thomas Wicker,Jan P. Buchmann,Jaakko Tanskanen,Alan H. Schulman,Heidrun Gundlach,Michael W. Bevan,Antonio Costa de Oliveira,Luciano da C. Maia,William R. Belknap,Ning Jiang,Jinsheng Lai,Liucun Zhu,Jianxin Ma,Cheng Sun,Ellen J. Pritham,Jérôme Salse,Florent Murat,Michael Abrouk,Rémy Bruggmann,Joachim Messing,Noah Fahlgren,Christopher M. Sullivan,James C. Carrington,Elisabeth J. Chapman,Greg D. May,Jixian Zhai,Matthias Ganssmann,Sai Guna Ranjan Gurazada,Marcelo A German,Blake C. Meyers,Pamela J. Green,Ludmila Tyler,Jiajie Wu,James A. Thomson,Shan Chen,Henrik Vibe Scheller,Jesper Harholt,Peter Ulvskov,Jeffrey A. Kimbrel,Laura E. Bartley,Peijian Cao,Ki-Hong Jung,Manoj Sharma,Miguel E. Vega-Sánchez,Pamela C. Ronald,Chris Dardick,Stefanie De Bodt,Wim Verelst,Dirk Inzé,Maren Heese,Arp Schnittger,Xiaohan Yang,Udaya C. Kalluri,Gerald A. Tuskan,Zhihua Hua,Richard D. Vierstra,Yu Cui,Shuhong Ouyang,Qixin Sun,Zhiyong Liu,Alper Yilmaz,Erich Grotewold,Richard Sibout,Kian Hématy,Grégory Mouille,Herman Höfte,Todd P. Michael,Jérôme Pelloux,Devin O'Connor,James C. Schnable,Scott C. Rowe,Frank G. Harmon,Cynthia L. Cass,John C. Sedbrook,Mary E. Byrne,Sean Walsh,Janet Higgins,Pinghua Li,Thomas P. Brutnell,Turgay Unver,Hikmet Budak,Harry Belcram,Mathieu Charles,Boulos Chalhoub,Ivan Baxter +136 more
TL;DR: The high-quality genome sequence will help Brachypodium reach its potential as an important model system for developing new energy and food crops and establishes a template for analysis of the large genomes of economically important pooid grasses such as wheat.
Journal ArticleDOI
Modeling gene and genome duplications in eukaryotes.
Steven Maere,Stefanie De Bodt,Jeroen Raes,Tineke Casneuf,Marc Van Montagu,Martin Kuiper,Yves Van de Peer +6 more
TL;DR: An evolutionary model that simulates the duplication dynamics of genes, considering genome-wide duplication events and a continuous mode of gene duplication is presented and it is shown that gene loss is strikingly different for large-scale and small-scale duplication Events and highly biased toward certain functional classes.
Journal ArticleDOI
Genome duplication and the origin of angiosperms
TL;DR: It is argued that these ancient polyploidy events might have also had an important role in the origin and diversification of the angiosperms.
Journal ArticleDOI
The gain and loss of genes during 600 million years of vertebrate evolution
Tine Blomme,Klaas Vandepoele,Stefanie De Bodt,Cedric Simillion,Steven Maere,Yves Van de Peer +5 more
TL;DR: Evidence is provided that massive gene duplication (probably as a consequence of entire genome duplications) at the dawn of vertebrate evolution might have been particularly important for the evolution of complex vertebrates.
Journal ArticleDOI
Exit from Proliferation during Leaf Development in Arabidopsis thaliana: A Not-So-Gradual Process
Megan Andriankaja,Stijn Dhondt,Stefanie De Bodt,Hannes Vanhaeren,Frederik Coppens,Liesbeth De Milde,Per Mühlenbock,Aleksandra Skirycz,Nathalie Gonzalez,Gerrit T.S. Beemster,Gerrit T.S. Beemster,Dirk Inzé +11 more
TL;DR: Genes differentially expressed during the transition from cell proliferation to expansion were enriched in genes involved in cell cycle, photosynthesis, and chloroplast retrograde signaling, and differentiation of the photosynthetic machinery is important for regulating the exit from proliferation.