J
Jeffrey A. Kimbrel
Researcher at Lawrence Livermore National Laboratory
Publications - 49
Citations - 2966
Jeffrey A. Kimbrel is an academic researcher from Lawrence Livermore National Laboratory. The author has contributed to research in topics: Biology & Medicine. The author has an hindex of 17, co-authored 35 publications receiving 2493 citations. Previous affiliations of Jeffrey A. Kimbrel include Oregon State University & Colorado State University.
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Journal ArticleDOI
Genome sequencing and analysis of the model grass Brachypodium distachyon
John P. Vogel,David F. Garvin,Todd C. Mockler,Jeremy Schmutz,Daniel S. Rokhsar,Michael W. Bevan,Kerrie Barry,Susan Lucas,Miranda Harmon-Smith,Kathleen Lail,Hope Tice,Jane Grimwood,Neil McKenzie,Naxin Huo,Yong Q. Gu,Gerard R. Lazo,Olin D. Anderson,Frank M. You,Ming-Cheng Luo,Jan Dvorak,Jonathan M. Wright,Melanie Febrer,Dominika Idziak,Robert Hasterok,Erika Lindquist,Mei Wang,Samuel E. Fox,Henry D. Priest,Sergei A. Filichkin,Scott A. Givan,Douglas W. Bryant,Jeff H. Chang,Haiyan Wu,Wei Wu,An-Ping Hsia,Patrick S. Schnable,Anantharaman Kalyanaraman,Brad Barbazuk,Todd P. Michael,Samuel P. Hazen,Jennifer N. Bragg,Debbie Laudencia-Chingcuanco,Yiqun Weng,Georg Haberer,Manuel Spannagl,Klaus F. X. Mayer,Thomas Rattei,Therese Mitros,Sang-Jik Lee,Jocelyn K. C. Rose,Lukas A. Mueller,Thomas L. York,Thomas Wicker,Jan P. Buchmann,Jaakko Tanskanen,Alan H. Schulman,Heidrun Gundlach,Michael W. Bevan,Antonio Costa de Oliveira,Luciano da C. Maia,William R. Belknap,Ning Jiang,Jinsheng Lai,Liucun Zhu,Jianxin Ma,Cheng Sun,Ellen J. Pritham,Jérôme Salse,Florent Murat,Michael Abrouk,Rémy Bruggmann,Joachim Messing,Noah Fahlgren,Christopher M. Sullivan,James C. Carrington,Elisabeth J. Chapman,Greg D. May,Jixian Zhai,Matthias Ganssmann,Sai Guna Ranjan Gurazada,Marcelo A German,Blake C. Meyers,Pamela J. Green,Ludmila Tyler,Jiajie Wu,James A. Thomson,Shan Chen,Henrik Vibe Scheller,Jesper Harholt,Peter Ulvskov,Jeffrey A. Kimbrel,Laura E. Bartley,Peijian Cao,Ki-Hong Jung,Manoj Sharma,Miguel E. Vega-Sánchez,Pamela C. Ronald,Chris Dardick,Stefanie De Bodt,Wim Verelst,Dirk Inzé,Maren Heese,Arp Schnittger,Xiaohan Yang,Udaya C. Kalluri,Gerald A. Tuskan,Zhihua Hua,Richard D. Vierstra,Yu Cui,Shuhong Ouyang,Qixin Sun,Zhiyong Liu,Alper Yilmaz,Erich Grotewold,Richard Sibout,Kian Hématy,Grégory Mouille,Herman Höfte,Todd P. Michael,Jérôme Pelloux,Devin O'Connor,James C. Schnable,Scott C. Rowe,Frank G. Harmon,Cynthia L. Cass,John C. Sedbrook,Mary E. Byrne,Sean Walsh,Janet Higgins,Pinghua Li,Thomas P. Brutnell,Turgay Unver,Hikmet Budak,Harry Belcram,Mathieu Charles,Boulos Chalhoub,Ivan Baxter +136 more
TL;DR: The high-quality genome sequence will help Brachypodium reach its potential as an important model system for developing new energy and food crops and establishes a template for analysis of the large genomes of economically important pooid grasses such as wheat.
Journal ArticleDOI
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
Olivia U. Mason,Nicole M. Scott,Antonio Gonzalez,Adam Robbins-Pianka,Jacob Bælum,Jeffrey A. Kimbrel,Nicholas J. Bouskill,Emmanuel Prestat,Sharon Borglin,Dominique C. Joyner,Julian L. Fortney,Diogo Jurelevicius,William T. Stringfellow,Lisa Alvarez-Cohen,Terry C. Hazen,Rob Knight,Jack A. Gilbert,Janet K. Jansson +17 more
TL;DR: Analysis of metagenomic sequence data revealed an increase in abundance of genes involved in denitrification pathways in samples that exceeded the Environmental Protection Agency (EPA)’s benchmarks for polycyclic aromatic hydrocarbons (PAHs) compared with those that did not.
Journal ArticleDOI
Recombineering and stable integration of the Pseudomonas syringae pv. syringae 61 hrp/hrc cluster into the genome of the soil bacterium Pseudomonas fluorescens Pf0-1
TL;DR: The development of Effector-to-Host Analyzer (EtHAn), a stable delivery system for individual or defined sets of type-III effectors into plant cells, is described and demonstrated its utility for studying effectors for their in planta functions.
Journal ArticleDOI
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
Samuel M. D. Seaver,Filipe Liu,Qizhi Zhang,James G. Jeffryes,José P. Faria,Janaka N. Edirisinghe,Michael B. Mundy,Nicholas Chia,Elad Noor,Moritz Emanuel Beber,Aaron A. Best,Matthew DeJongh,Jeffrey A. Kimbrel,Patrik D'haeseleer,Sean R. McCorkle,Jay R. Bolton,Erik Pearson,Shane Canon,Elisha M. Wood-Charlson,Robert W. Cottingham,Adam P. Arkin,Christopher S. Henry +21 more
TL;DR: The biochemistry database serves as the foundation of biochemical data underlying ModelSEED and KBase.org and is designed as a biochemical 'Rosetta Stone' to facilitate comparison and integration of annotations from many different tools and databases.
Journal ArticleDOI
Copper Delivery by the Copper Chaperone for Chloroplast and Cytosolic Copper/Zinc-Superoxide Dismutases: Regulation and Unexpected Phenotypes in an Arabidopsis Mutant
Christopher M. Cohu,Salah E. Abdel-Ghany,Kathryn A. Gogolin Reynolds,Alexander M. Onofrio,Jared R. Bodecker,Jeffrey A. Kimbrel,Krishna K. Niyogi,Marinus Pilon +7 more
TL;DR: It is demonstrated that Arabidopsis CCS transcript levels are regulated by Cu, mediated by microRNA 398 that was not previously predicted to target CCS, and the data suggest that Cu-regulated microRNAs may have more mRNA targets than was previously predicted.