J
Jan P. Buchmann
Researcher at University of Sydney
Publications - 30
Citations - 3834
Jan P. Buchmann is an academic researcher from University of Sydney. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 15, co-authored 28 publications receiving 3156 citations. Previous affiliations of Jan P. Buchmann include University of Zurich & University of Helsinki.
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Journal ArticleDOI
Genome sequencing and analysis of the model grass Brachypodium distachyon
John P. Vogel,David F. Garvin,Todd C. Mockler,Jeremy Schmutz,Daniel S. Rokhsar,Michael W. Bevan,Kerrie Barry,Susan Lucas,Miranda Harmon-Smith,Kathleen Lail,Hope Tice,Jane Grimwood,Neil McKenzie,Naxin Huo,Yong Q. Gu,Gerard R. Lazo,Olin D. Anderson,Frank M. You,Ming-Cheng Luo,Jan Dvorak,Jonathan M. Wright,Melanie Febrer,Dominika Idziak,Robert Hasterok,Erika Lindquist,Mei Wang,Samuel E. Fox,Henry D. Priest,Sergei A. Filichkin,Scott A. Givan,Douglas W. Bryant,Jeff H. Chang,Haiyan Wu,Wei Wu,An-Ping Hsia,Patrick S. Schnable,Anantharaman Kalyanaraman,Brad Barbazuk,Todd P. Michael,Samuel P. Hazen,Jennifer N. Bragg,Debbie Laudencia-Chingcuanco,Yiqun Weng,Georg Haberer,Manuel Spannagl,Klaus F. X. Mayer,Thomas Rattei,Therese Mitros,Sang-Jik Lee,Jocelyn K. C. Rose,Lukas A. Mueller,Thomas L. York,Thomas Wicker,Jan P. Buchmann,Jaakko Tanskanen,Alan H. Schulman,Heidrun Gundlach,Michael W. Bevan,Antonio Costa de Oliveira,Luciano da C. Maia,William R. Belknap,Ning Jiang,Jinsheng Lai,Liucun Zhu,Jianxin Ma,Cheng Sun,Ellen J. Pritham,Jérôme Salse,Florent Murat,Michael Abrouk,Rémy Bruggmann,Joachim Messing,Noah Fahlgren,Christopher M. Sullivan,James C. Carrington,Elisabeth J. Chapman,Greg D. May,Jixian Zhai,Matthias Ganssmann,Sai Guna Ranjan Gurazada,Marcelo A German,Blake C. Meyers,Pamela J. Green,Ludmila Tyler,Jiajie Wu,James A. Thomson,Shan Chen,Henrik Vibe Scheller,Jesper Harholt,Peter Ulvskov,Jeffrey A. Kimbrel,Laura E. Bartley,Peijian Cao,Ki-Hong Jung,Manoj Sharma,Miguel E. Vega-Sánchez,Pamela C. Ronald,Chris Dardick,Stefanie De Bodt,Wim Verelst,Dirk Inzé,Maren Heese,Arp Schnittger,Xiaohan Yang,Udaya C. Kalluri,Gerald A. Tuskan,Zhihua Hua,Richard D. Vierstra,Yu Cui,Shuhong Ouyang,Qixin Sun,Zhiyong Liu,Alper Yilmaz,Erich Grotewold,Richard Sibout,Kian Hématy,Grégory Mouille,Herman Höfte,Todd P. Michael,Jérôme Pelloux,Devin O'Connor,James C. Schnable,Scott C. Rowe,Frank G. Harmon,Cynthia L. Cass,John C. Sedbrook,Mary E. Byrne,Sean Walsh,Janet Higgins,Pinghua Li,Thomas P. Brutnell,Turgay Unver,Hikmet Budak,Harry Belcram,Mathieu Charles,Boulos Chalhoub,Ivan Baxter +136 more
TL;DR: The high-quality genome sequence will help Brachypodium reach its potential as an important model system for developing new energy and food crops and establishes a template for analysis of the large genomes of economically important pooid grasses such as wheat.
Journal ArticleDOI
Redefining the invertebrate RNA virosphere
Mang Shi,Xian-Dan Lin,Jun-Hua Tian,Liangjun Chen,Xiao Chen,Ci-Xiu Li,Xin-Cheng Qin,Jun Li,Jian-Ping Cao,John-Sebastian Eden,Jan P. Buchmann,Wen Wang,Jianguo Xu,Edward C. Holmes,Edward C. Holmes,Yong-Zhen Zhang +15 more
TL;DR: A view of the RNA virosphere is presented that is more phylogenetically and genomically diverse than that depicted in current classification schemes and provide a more solid foundation for studies in virus ecology and evolution.
Journal ArticleDOI
The wheat powdery mildew genome shows the unique evolution of an obligate biotroph
Thomas Wicker,Simone Oberhaensli,Francis Parlange,Jan P. Buchmann,Jan P. Buchmann,Margarita Shatalina,Stefan Roffler,Roi Ben-David,Roi Ben-David,Jaroslav Doležel,Hana Šimková,Paul Schulze-Lefert,Pietro Spanu,Rémy Bruggmann,Joelle Amselem,Hadi Quesneville,Emiel Ver Loren van Themaat,Timothy Paape,Kentaro Shimizu,Beat Keller +19 more
TL;DR: It is suggested that mildew genomes are mosaics of ancient haplogroups that existed before wheat domestication and there was no pronounced loss of genetic diversity upon formation of the new host bread wheat 10,000 years ago.
Journal ArticleDOI
17th Century Variola Virus Reveals the Recent History of Smallpox
Ana T. Duggan,Maria F. Perdomo,Dario Piombino-Mascali,Stephanie Marciniak,Debi Poinar,Matthew V. Emery,Jan P. Buchmann,Sebastián Duchêne,Sebastián Duchêne,Rimantas Jankauskas,Margaret Humphreys,G. Brian Golding,John Southon,Alison Devault,Jean Marie Rouillard,Jason W. Sahl,Olivier Dutour,Olivier Dutour,Klaus Hedman,Antti Sajantila,Geoffrey L. Smith,Edward C. Holmes,Hendrik N. Poinar +22 more
TL;DR: Molecular-clock analyses revealed a strong clock-like structure and that the timescale of smallpox evolution is more recent than often supposed, with the diversification of major viral lineages only occurring within the 18th and 19th centuries, concomitant with the development of modern vaccination.
Journal ArticleDOI
Patching gaps in plant genomes results in gene movement and erosion of colinearity.
TL;DR: Evidence is found that gene movements can also be caused when DSBs are repaired after template slippage or unequal crossing-over events, which can explain the erosion of gene colinearity between plant genomes during evolution.