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Sean Walsh
Researcher at ETH Zurich
Publications - 12
Citations - 2446
Sean Walsh is an academic researcher from ETH Zurich. The author has contributed to research in topics: Proteome & Transcriptome. The author has an hindex of 11, co-authored 12 publications receiving 2260 citations. Previous affiliations of Sean Walsh include John Innes Centre & Nottingham University Hospitals NHS Trust.
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Journal ArticleDOI
Genome sequencing and analysis of the model grass Brachypodium distachyon
John P. Vogel,David F. Garvin,Todd C. Mockler,Jeremy Schmutz,Daniel S. Rokhsar,Michael W. Bevan,Kerrie Barry,Susan Lucas,Miranda Harmon-Smith,Kathleen Lail,Hope Tice,Jane Grimwood,Neil McKenzie,Naxin Huo,Yong Q. Gu,Gerard R. Lazo,Olin D. Anderson,Frank M. You,Ming-Cheng Luo,Jan Dvorak,Jonathan M. Wright,Melanie Febrer,Dominika Idziak,Robert Hasterok,Erika Lindquist,Mei Wang,Samuel E. Fox,Henry D. Priest,Sergei A. Filichkin,Scott A. Givan,Douglas W. Bryant,Jeff H. Chang,Haiyan Wu,Wei Wu,An-Ping Hsia,Patrick S. Schnable,Anantharaman Kalyanaraman,Brad Barbazuk,Todd P. Michael,Samuel P. Hazen,Jennifer N. Bragg,Debbie Laudencia-Chingcuanco,Yiqun Weng,Georg Haberer,Manuel Spannagl,Klaus F. X. Mayer,Thomas Rattei,Therese Mitros,Sang-Jik Lee,Jocelyn K. C. Rose,Lukas A. Mueller,Thomas L. York,Thomas Wicker,Jan P. Buchmann,Jaakko Tanskanen,Alan H. Schulman,Heidrun Gundlach,Michael W. Bevan,Antonio Costa de Oliveira,Luciano da C. Maia,William R. Belknap,Ning Jiang,Jinsheng Lai,Liucun Zhu,Jianxin Ma,Cheng Sun,Ellen J. Pritham,Jérôme Salse,Florent Murat,Michael Abrouk,Rémy Bruggmann,Joachim Messing,Noah Fahlgren,Christopher M. Sullivan,James C. Carrington,Elisabeth J. Chapman,Greg D. May,Jixian Zhai,Matthias Ganssmann,Sai Guna Ranjan Gurazada,Marcelo A German,Blake C. Meyers,Pamela J. Green,Ludmila Tyler,Jiajie Wu,James A. Thomson,Shan Chen,Henrik Vibe Scheller,Jesper Harholt,Peter Ulvskov,Jeffrey A. Kimbrel,Laura E. Bartley,Peijian Cao,Ki-Hong Jung,Manoj Sharma,Miguel E. Vega-Sánchez,Pamela C. Ronald,Chris Dardick,Stefanie De Bodt,Wim Verelst,Dirk Inzé,Maren Heese,Arp Schnittger,Xiaohan Yang,Udaya C. Kalluri,Gerald A. Tuskan,Zhihua Hua,Richard D. Vierstra,Yu Cui,Shuhong Ouyang,Qixin Sun,Zhiyong Liu,Alper Yilmaz,Erich Grotewold,Richard Sibout,Kian Hématy,Grégory Mouille,Herman Höfte,Todd P. Michael,Jérôme Pelloux,Devin O'Connor,James C. Schnable,Scott C. Rowe,Frank G. Harmon,Cynthia L. Cass,John C. Sedbrook,Mary E. Byrne,Sean Walsh,Janet Higgins,Pinghua Li,Thomas P. Brutnell,Turgay Unver,Hikmet Budak,Harry Belcram,Mathieu Charles,Boulos Chalhoub,Ivan Baxter +136 more
TL;DR: The high-quality genome sequence will help Brachypodium reach its potential as an important model system for developing new energy and food crops and establishes a template for analysis of the large genomes of economically important pooid grasses such as wheat.
Journal ArticleDOI
Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism
Joerg Martin Buescher,Wolfram Liebermeister,Matthieu Jules,Markus Uhr,Jan Muntel,Eric Botella,Bernd Hessling,Roelco J. Kleijn,Ludovic Le Chat,François Lecointe,Ulrike Mäder,Pierre Nicolas,Sjouke Piersma,Frank Rügheimer,Dörte Becher,Philippe Bessières,Elena Bidnenko,Emma L. Denham,Etienne Dervyn,Kevin M. Devine,Geoff Doherty,Samuel Drulhe,Liza Felicori,Mark J. Fogg,Anne Goelzer,Annette Hansen,Colin R. Harwood,Michael Hecker,Sebastian Hubner,Claus Hultschig,Hanne Østergaard Jarmer,Edda Klipp,Aurélie Leduc,Peter J. Lewis,F. Molina,Philippe Noirot,Sabine Peres,Nathalie Pigeonneau,Susanne Pohl,Simon Rasmussen,Bernd Rinn,Marc Schaffer,Julian Schnidder,Benno Schwikowski,Jan Maarten van Dijl,Patrick Veiga,Sean Walsh,Anthony J. Wilkinson,Jörg Stelling,Stéphane Aymerich,Uwe Sauer +50 more
TL;DR: The responses of a bacterium to changing nutritional conditions are explored and an initial understanding of why certain regulatory strategies may be favored during evolution of dynamic control systems is offered.
Journal ArticleDOI
Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit
Katja Baerenfaller,Catherine Massonnet,Sean Walsh,Sacha Baginsky,Peter Bühlmann,Lars Hennig,Lars Hennig,Matthias Hirsch-Hoffmann,Katharine A. Howell,Sabine Kahlau,Sabine Kahlau,Amandine Radziejwoski,Doris Russenberger,Dorothea Rutishauser,Ian Small,Daniel J. Stekhoven,Ronan Sulpice,Julia Svozil,Nathalie Wuyts,Mark Stitt,Pierre Hilson,Christine Granier,Wilhelm Gruissem +22 more
TL;DR: It is found that the lower soil water potential led to reduced, but prolonged, growth and an adaptation at the molecular level without a drought stress response, and only very few of >1700 quantified proteins showed diurnal abundance fluctuations, despite strong fluctuations at the transcript level.
Journal ArticleDOI
Probing the Reproducibility of Leaf Growth and Molecular Phenotypes: A Comparison of Three Arabidopsis Accessions Cultivated in Ten Laboratories
Catherine Massonnet,Denis Vile,Juliette Fabre,Matthew A. Hannah,Camila Caldana,Jan Lisec,Gerrit T.S. Beemster,Rhonda C. Meyer,Gaëlle Messerli,Jesper T. Gronlund,Josip Perkovic,Emma Wigmore,Sean T. May,Michael W. Bevan,Christian Meyer,Silvia Rubio-Díaz,Detlef Weigel,José Luis Micol,Vicky Buchanan-Wollaston,Fabio Fiorani,Sean Walsh,Bernd Rinn,Wilhelm Gruissem,Pierre Hilson,Lars Hennig,Lothar Willmitzer,Christine Granier +26 more
TL;DR: It is revealed that small variations in growing conditions and handling of plants can account for significant differences in phenotypes and molecular profiles obtained in independent laboratories.
Journal ArticleDOI
Arabidopsis Reactome: A Foundation Knowledgebase for Plant Systems Biology
Nicolas Tsesmetzis,Matthew Couchman,Janet Higgins,Alison M. Smith,John H. Doonan,Georg J. Seifert,Esther Schmidt,Imre Vastrik,Ewan Birney,Guanming Wu,Peter D'Eustachio,Peter D'Eustachio,Lincoln Stein,Richard J. Morris,Michael W. Bevan,Sean Walsh +15 more
TL;DR: This work describes a new way of capturing and representing biological knowledge that allows computational approaches for interpreting the large volumes of diverse data generated by modern biological research.