Showing papers in "Trends in Ecology and Evolution in 2013"

Impacts of biological invasions: what's what and the way forward

Abstract: Study of the impacts of biological invasions, a pervasive component of global change, has generated remarkable understanding of the mechanisms and consequences of the spread of introduced populations. The growing field of invasion science, poised at a crossroads where ecology, social sciences, resource management, and public perception meet, is increasingly exposed to critical scrutiny from several perspectives. Although the rate of biological invasions, elucidation of their consequences, and knowledge about mitigation are growing rapidly, the very need for invasion science is disputed. Here, we highlight recent progress in understanding invasion impacts and management, and discuss the challenges that the discipline faces in its science and interactions with society.

Ecological intensification: harnessing ecosystem services for food security

Abstract: Rising demands for agricultural products will increase pressure to further intensify crop production, while negative environmental impacts have to be minimized. Ecological intensification entails the environmentally friendly replacement of anthropogenic inputs and/or enhancement of crop productivity, by including regulating and supporting ecosystem services management in agricultural practices. Effective ecological intensification requires an understanding of the relations between land use at different scales and the community composition of ecosystem service-providing organisms above and below ground, and the flow, stability, contribution to yield, and management costs of the multiple services delivered by these organisms. Research efforts and investments are particularly needed to reduce existing yield gaps by integrating context-appropriate bundles of ecosystem services into crop production systems.

A functional approach reveals community responses to disturbances

Abstract: Understanding the processes shaping biological communities under multiple disturbances is a core challenge in ecology and conservation science. Traditionally, ecologists have explored linkages between the severity and type of disturbance and the taxonomic structure of communities. Recent advances in the application of species traits, to assess the functional structure of communities, have provided an alternative approach that responds rapidly and consistently across taxa and ecosystems to multiple disturbances. Importantly, trait-based metrics may provide advanced warning of disturbance to ecosystems because they do not need species loss to be reactive. Here, we synthesize empirical evidence and present a theoretical framework, based on species positions in a functional space, as a tool to reveal the complex nature of change in disturbed ecosystems.

Understanding and managing conservation conflicts

Abstract: Conservation conflicts are increasing and need to be managed to minimise negative impacts on biodiversity, human livelihoods, and human well-being. Here, we explore strategies and case studies that highlight the long-term, dynamic nature of conflicts and the challenges to their management. Conflict management requires parties to recognise problems as shared ones, and engage with clear goals, a transparent evidence base, and an awareness of trade-offs. We hypothesise that conservation outcomes will be less durable when conservationists assert their interests to the detriment of others. Effective conflict management and long-term conservation benefit will be enhanced by better integration of the underpinning social context with the material impacts and evaluation of the efficacy of alternative conflict management approaches.

Complex cocktails: the evolutionary novelty of venoms.

Abstract: Venoms have evolved on numerous occasions throughout the animal kingdom. These 'biochemical weapon systems' typically function to facilitate, or protect the producing animal from, predation. Most venomous animals remain unstudied despite venoms providing model systems for investigating predator-prey interactions, molecular evolution, functional convergence, and novel targets for pharmaceutical discovery. Through advances in 'omic' technologies, venom composition data have recently become available for several venomous lineages, revealing considerable complexity in the processes responsible for generating the genetic and functional diversity observed in many venoms. Here, we review these recent advances and highlight the ecological and evolutionary novelty of venom systems.

Will plant movements keep up with climate change

Abstract: In the face of anthropogenic climate change, species must acclimate, adapt, move, or die. Although some species are moving already, their ability to keep up with the faster changes expected in the future is unclear. 'Migration lag' is a particular concern with plants, because it could threaten both biodiversity and carbon storage. Plant movements are not realistically represented in models currently used to predict future vegetation and carbon-cycle feedbacks, so there is an urgent need to understand how much of a problem failure to track climate change is likely to be. Therefore, in this review, we compare how fast plants need to move with how fast they can move; that is, the velocity of climate change with the velocity of plant movement.

Ten years of landscape genetics

Abstract: Landscape genetics is now ten years old. It has stimulated research into the effect of landscapes on evolutionary processes. This review describes the main topics that have contributed most significantly to the progress of landscape genetics, such as conceptual and methodological developments in spatial and temporal patterns of gene flow, seascape genetics, and landscape genomics. We then suggest perspectives for the future, investigating what the field will contribute to the assessment of global change and conservation in general and to the management of tropical and urban areas in particular. To address these urgent topics, future work in landscape genetics should focus on a better integration of neutral and adaptive genetic variation and their interplay with species distribution and the environment.

Population genomics of rapid adaptation by soft selective sweeps

Abstract: Organisms can often adapt surprisingly quickly to evolutionary challenges, such as the application of pesticides or antibiotics, suggesting an abundant supply of adaptive genetic variation. In these situations, adaptation should commonly produce 'soft' selective sweeps, where multiple adaptive alleles sweep through the population at the same time, either because the alleles were already present as standing genetic variation or arose independently by recurrent de novo mutations. Most well-known examples of rapid molecular adaptation indeed show signatures of such soft selective sweeps. Here, we review the current understanding of the mechanisms that produce soft sweeps and the approaches used for their identification in population genomic data. We argue that soft sweeps might be the dominant mode of adaptation in many species.

Phylogenetic diversity and nature conservation: where are we?

Abstract: To date, there is little evidence that phylogenetic diversity has contributed to nature conservation. Here, we discuss the scientific justification of using phylogenetic diversity in conservation and the reasons for its neglect. We show that, apart from valuing the rarity and richness aspect, commonly quoted justifications based on the usage of phylogenetic diversity as a proxy for functional diversity or evolutionary potential are still based on uncertainties. We discuss how a missing guideline through the variety of phylogenetic diversity metrics and their relevance for conservation might be responsible for the hesitation to include phylogenetic diversity in conservation practice. We outline research routes that can help to ease uncertainties and bridge gaps between research and conservation with respect to phylogenetic diversity.

Pollinator-mediated evolution of floral signals

Abstract: Because most plants rely on animals for pollination, insights from animal sensory ecology and behavior are essential for understanding the evolution of flowers. In this review, we compare and contrast three main types of pollinator responses to floral signals--receiver bias, 'adaptive' innate preferences, and associative learning--and discuss how they can shape selection on floral signals. We show that pollinator-mediated selection on floral signals can be strong and that the molecular bases of floral signal variation are often surprisingly simple. These new empirical and conceptual insights into pollinator-mediated evolution provide a framework for understanding patterns of both convergent (pollination syndromes) and advergent (floral mimicry) floral signal evolution.

The intermediate disturbance hypothesis should be abandoned

Abstract: A leading idea about how disturbances and other environmental fluctuations affect species diversity is the intermediate disturbance hypothesis (IDH). The IDH states that diversity of competing species is, or should be expected to be, maximized at intermediate frequencies and/or intensities of disturbance or environmental change. I argue that the IDH has been refuted on both empirical and theoretical grounds, and so should be abandoned. Empirical studies only rarely find the predicted humped diversity–disturbance relationship. Theoretically, the three major mechanisms thought to produce humped diversity–disturbance relationships are logically invalid and do not actually predict what they are thought to predict. Disturbances and other environmental fluctuations can affect diversity, but for different reasons than are commonly recognized.

Navjot's nightmare revisited: logging, agriculture, and biodiversity in Southeast Asia

Abstract: In 2004, Navjot Sodhi and colleagues warned that logging and agricultural conversion of Southeast Asia's forests were leading to a biodiversity disaster. We evaluate this prediction against subsequent research and conclude that most of the fauna of the region can persist in logged forests. Conversely, conversion of primary or logged forests to plantation crops, such as oil palm, causes tremendous biodiversity loss. This loss is exacerbated by increased fire frequency. Therefore, we conclude that preventing agricultural conversion of logged forests is essential to conserving the biodiversity of this region. Our analysis also suggests that, because Southeast Asian forests are tightly tied to global commodity markets, conservation payments commensurate with combined returns from logging and subsequent agricultural production may be required to secure long-term forest protection.

The origins of tropical marine biodiversity

Abstract: Recent phylogeographic studies have overturned three paradigms for the origins of marine biodiversity. (i) Physical (allopatric) isolation is not the sole avenue for marine speciation: many species diverge along ecological boundaries. (ii) Peripheral habitats such as oceanic archipelagos are not evolutionary graveyards: these regions can export biodiversity. (iii) Speciation in marine and terrestrial ecosystems follow similar processes but are not the same: opportunities for allopatric isolation are fewer in the oceans, leaving greater opportunity for speciation along ecological boundaries. Biodiversity hotspots such as the Caribbean Sea and the Indo-Pacific Coral Triangle produce and export species, but can also accumulate biodiversity produced in peripheral habitats. Both hotspots and peripheral ecosystems benefit from this exchange in a process dubbed biodiversity feedback.

Founder takes all: density-dependent processes structure biodiversity

Abstract: Density-dependent processes play a key role in the spatial structuring of biodiversity. Specifically, interrelated demographic processes, such as gene surfing, high-density blocking, and competitive exclusion, can generate striking geographic contrasts in the distributions of genes and species. Here, we propose that well-studied evolutionary and ecological biogeographic patterns of postglacial recolonization, progressive island colonization, microbial sectoring, and even the 'Out of Africa' pattern of human expansion, are fundamentally similar, underpinned by a 'founder takes all' density-dependent principle. Additionally, we hypothesize that older historic constraints of density-dependent processes are seen today in the dramatic biogeographic shifts that occur in response to human-mediated extinction events, whereby surviving lineages rapidly expand their ranges to replace extinct sister taxa.

Evolutionary divergence in acoustic signals: causes and consequences

Abstract: Acoustic signals mediate mate choice, resource defense, and species recognition in a broad range of taxa. It has been proposed, therefore, that divergence in acoustic signals plays a key role in speciation. Nonetheless, the processes driving divergence of acoustic traits and their consequences in terms of speciation are poorly understood. A review of empirical and comparative studies reveals strong support for a role of sexual selection in acoustic divergence, but the possible concomitant influences of ecological context are rarely examined. We summarize a conceptual framework for testing the relative significance of both adaptive and neutral mechanisms leading to acoustic divergence, predictions for cases where these processes lead to speciation, and how their relative importance plays out over evolutionary time.

Ecological novelty and the emergence of evolutionary traps.

Abstract: Human-induced rapid environmental change (HIREC; e.g., climate change or exotic species) has caused global species declines. Although behavioral plasticity has buffered some species against HIREC, maladaptive behavioral scenarios called 'evolutionary traps' are increasingly common, threatening the persistence of affected species. Here, we review examples of evolutionary traps to identify their anthropogenic causes, behavioral mechanisms, and evolutionary bases, and to better forecast forms of HIREC liable to trigger traps. We summarize a conceptual framework for explaining the susceptibility of animals to traps that integrates the cost-benefit approach of standard behavioral ecology with an evolutionary approach (reaction norms) to understanding cue-response systems (signal detection). Finally, we suggest that a significant revision of conceptual thinking in wildlife conservation and management is needed to effectively eliminate and mitigate evolutionary traps.

Bias and error in understanding plant invasion impacts

Abstract: Quantitative assessments of alien plant impacts are essential to inform management to ensure that resources are prioritized against the most problematic species and that restoration targets the worst-affected ecosystem processes. Here, we present the first detailed critique of quantitative field studies of alien plant impacts and highlight biases in the biogeography and life form of the target species, the responses assessed, and the extent to which spatial variability is addressed. Observed impacts often fail to translate to ecosystem services or evidence of environmental degradation. The absence of overarching hypotheses regarding impacts has reduced the consistency of approaches worldwide and prevented the development of predictive tools. Future studies must ensure that the links between species traits, ecosystem stocks, and ecosystem flows, as well as ecosystem services, are explicitly defined.

On the hope for biodiversity-friendly tropical landscapes.

Abstract: With the decreasing affordability of protecting large blocks of pristine tropical forests, ecologists have staked their hopes on the management of human-modified landscapes (HMLs) to conserve tropical biodiversity. Here, we examine key forces affecting the dynamics of HMLs, and propose a framework connecting human disturbances, land use, and prospects for both tropical biodiversity and ecosystem services. We question the forest transition as a worldwide source of new secondary forest; the role played by regenerating (secondary) forest for biodiversity conservation, and the resilience of HMLs. We then offer a conceptual model describing potential successional trajectories among four major landscape types (natural, conservation, functional, and degraded) and highlight the potential implications of our model in terms of research agendas and conservation planning.

Conceptual domain of the matrix in fragmented landscapes

Abstract: In extensively modified landscapes, how the matrix is managed determines many conservation outcomes. Recent publications revise popular conceptions of a homogeneous and static matrix, yet we still lack an adequate conceptual model of the matrix. Here, we identify three core effects that influence patch-dependent species, through impacts associated with movement and dispersal, resource availability, and the abiotic environment. These core effects are modified by five ‘dimensions’: spatial and temporal variation in matrix quality; spatial scale; temporal scale of matrix variation; and adaptation. The conceptual domain of the matrix, defined as three core effects and their interaction with these five dimensions, provides a much-needed framework to underpin management of fragmented landscapes and highlights new research priorities.

Combined effects of global change pressures on animal-mediated pollination

Abstract: Pollination is an essential process in the sexual reproduction of seed plants and a key ecosystem service to human welfare. Animal pollinators decline as a consequence of five major global change pressures: climate change, landscape alteration, agricultural intensification, non-native species, and spread of pathogens. These pressures, which differ in their biotic or abiotic nature and their spatiotemporal scales, can interact in nonadditive ways (synergistically or antagonistically), but are rarely considered together in studies of pollinator and/or pollination decline. Management actions aimed at buffering the impacts of a particular pressure could thereby prove ineffective if another pressure is present. Here, we focus on empirical evidence of the combined effects of global change pressures on pollination, highlighting gaps in current knowledge and future research needs.

Exploring the costs of horizontal gene transfer

Abstract: Horizontal gene transfer (HGT) is one of the most important evolutionary forces within microbial populations. Although evidence for beneficial fitness effects of HGT is overwhelming, recently acquired regions often function inefficiently within new genomic backgrounds so that each transfer event has the potential to disrupt existing regulatory and physiological networks. Identifying and exploring costs is essential for guiding general discussions about the interplay between selection and HGT, as well as generating hypotheses to explain how HGT affects evolutionary potential through, for example, changing adaptive trajectories. Focusing on costs of HGT as foundations for future studies will enhance exploration at the interface between acquired regions and recipient genomes, including the process of amelioration, and enable experimental evaluation of the role of HGT in structuring genetic diversity across populations.

Living dangerously on borrowed time during slow, unrecognized regime shifts

Abstract: Regime shifts from one ecological state to another are often portrayed as sudden, dramatic, and difficult to reverse. Yet many regime shifts unfold slowly and imperceptibly after a tipping point has been exceeded, especially at regional and global scales. These long, smooth transitions between equilibrium states are easy to miss, ignore, or deny, confounding management and governance. However, slow responses by ecosystems after transgressing a dangerous threshold also affords borrowed time - a window of opportunity to return to safer conditions before the new state eventually locks in and equilibrates. In this context, the most important challenge is a social one: convincing enough people to confront business-as-usual before time runs out to reverse unwanted regime shifts even after they have already begun.

Tinbergen's four questions: an appreciation and an update

Abstract: This year is the 50th anniversary of Tinbergen’s (1963) article ‘On aims and methods of ethology’, where he first outlined the four ‘major problems of biology’. The classification of the four problems, or questions, is one of Tinbergen’s most enduring legacies, and it remains as valuable today as 50 years ago in highlighting the value of a comprehensive, multifaceted understanding of a characteristic, with answers to each question providing complementary insights. Nonetheless, much has changed in the intervening years, and new data call for a more nuanced application of Tinbergen’s framework. The anniversary would seem a suitable opportunity to reflect on the four questions and evaluate the scientific work that they encourage. Origins of Tinbergen’s questions

Environmental stressors alter relationships between physiology and behaviour.

Abstract: Although correlations have frequently been observed between specific physiological and behavioural traits across a range of animal taxa, the nature of these associations has been shown to vary. Here we argue that a major source of this inconsistency is the influence of environmental stressors, which seem capable of revealing, masking, or modulating covariation in physiological and behavioural traits. These effects appear to be mediated by changes in the observed variation of traits and differential sensitivity to stressors among phenotypes. Considering that wild animals routinely face a range of biotic and abiotic stressors, increased knowledge of these effects is imperative for understanding the causal mechanisms of a range of ecological phenomena and evolutionary responses to stressors associated with environmental change.

Cryptic or mystic? Glacial tree refugia in northern Europe

Abstract: Here, we examine the evidence for tree refugia in northern Europe during the Late Pleniglacial (LPG) interval of maximum tree-range contraction. Our review highlights the often equivocal nature of genetic data and a tendency to overestimate potential tree distributions due to warm climate-model bias, and also reveals a convergence of macrofossil and pollen evidence. What emerges is the absence of temperate trees north of 45°N and a west–east (W–E) asymmetry in boreal tree distribution, with a treeless Western Europe north of 46°N, while restricted boreal populations persisted in Eastern Europe up to 49°N, and higher latitudes east of the Fennoscandian ice-sheet. These results have implications for current thinking on European genetic diversity patterns, species migration capacity, and conservation strategies.

Ecosystem ecology: size-based constraints on the pyramids of life

Abstract: Biomass distribution and energy flow in ecosystems are traditionally described with trophic pyramids, and increasingly with size spectra, particularly in aquatic ecosystems. Here, we show that these methods are equivalent and interchangeable representations of the same information. Although pyramids are visually intuitive, explicitly linking them to size spectra connects pyramids to metabolic and size-based theory, and illuminates size-based constraints on pyramid shape. We show that bottom-heavy pyramids should predominate in the real world, whereas top-heavy pyramids indicate overestimation of predator abundance or energy subsidies. Making the link to ecological pyramids establishes size spectra as a central concept in ecosystem ecology, and provides a powerful framework both for understanding baseline expectations of community structure and for evaluating future scenarios under climate change and exploitation.

Multiscale regime shifts and planetary boundaries

Abstract: Life on Earth has repeatedly displayed abrupt and massive changes in the past, and there is no reason to expect that comparable planetary-scale regime shifts will not continue in the future. Different lines of evidence indicate that regime shifts occur when the climate or biosphere transgresses a tipping point. Whether human activities will trigger such a global event in the near future is uncertain, due to critical knowledge gaps. In particular, we lack understanding of how regime shifts propagate across scales, and whether local or regional tipping points can lead to global transitions. The ongoing disruption of ecosystems and climate, combined with unprecedented breakdown of isolation by human migration and trade, highlights the need to operate within safe planetary boundaries.

The seminal symphony: how to compose an ejaculate.

Abstract: Ejaculates are fundamental to fitness in sexually reproducing animals: males gain all their direct fitness via the ejaculate and females require ejaculates to reproduce. Both sperm and non-sperm components of the ejaculate (including parasperm, seminal proteins, water, and macromolecules) play vital roles in postcopulatory sexual selection and conflict, processes that can potentially drive rapid evolutionary change and reproductive isolation. Here, we assess the increasing evidence that considering ejaculate composition as a whole (and potential trade-offs among ejaculate components) has important consequences for predictions about male reproductive investment and female responses to ejaculates. We review current theory and empirical work, and detail how social and environmental effects on ejaculate composition have potentially far-reaching fitness consequences for both sexes.

Do simple models lead to generality in ecology

Abstract: Modellers of biological, ecological, and environmental systems cannot take for granted the maxim 'simple means general means good'. We argue here that viewing simple models as the main way to achieve generality may be an obstacle to the progress of ecological research. We show how complex models can be both desirable and general, and how simple and complex models can be linked together to produce broad-scale and predictive understanding of biological systems.

Reality mining of animal social systems.

Abstract: The increasing miniaturisation of animal-tracking technology has made it possible to gather exceptionally detailed machine-sensed data on the social dynamics of almost entire populations of individuals, in both terrestrial and aquatic study systems. Here, we review important issues concerning the collection of such data, and their processing and analysis, to identify the most promising approaches in the emerging field of 'reality mining'. Automated technologies can provide data sensing at time intervals small enough to close the gap between social patterns and their underlying processes, providing insights into how social structures arise and change dynamically over different timescales. Especially in conjunction with experimental manipulations, reality mining promises significant advances in basic and applied research on animal social systems.