Disentangling Interactions in the Microbiome: A Network Perspective.
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TLDR
Network-based analytical approaches have the potential to help disentangle complex polymicrobial and microbe–host interactions, and thereby further the applicability of microbiome research to personalized medicine, public health, environmental and industrial applications, and agriculture.About:
This article is published in Trends in Microbiology.The article was published on 2017-03-01 and is currently open access. It has received 502 citations till now. The article focuses on the topics: Microbiome.read more
Citations
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Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data.
TL;DR: This protocol details MicrobiomeAnalyst, a user-friendly, web-based platform for comprehensive statistical, functional, and meta-analysis of microbiome data, a one-stop shop that enables microbiome researchers to thoroughly explore their preprocessed microbiome data via intuitive web interfaces.
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Microbial interactions within the plant holobiont.
TL;DR: The fundamental role of microbe-microbe interactions (prokaryotes and micro-eukaryotes) for microbial community structure and plant health is discussed and a conceptual framework illustrating that interactions among microbiota members are critical for the establishment and the maintenance of host-microbial homeostasis is provided.
Journal ArticleDOI
Core microbiomes for sustainable agroecosystems.
Hirokazu Toju,Hirokazu Toju,Kabir G. Peay,Masato Yamamichi,Kazuhiko Narisawa,Kei Hiruma,Kei Hiruma,Ken Naito,Shinji Fukuda,Masayuki Ushio,Masayuki Ushio,Shinji Nakaoka,Shinji Nakaoka,Yusuke Onoda,Kentaro Yoshida,Kentaro Yoshida,Klaus Schlaeppi,Yang Bai,Ryo Sugiura,Ryo Sugiura,Yasunori Ichihashi,Kiwamu Minamisawa,E. Toby Kiers +22 more
TL;DR: In an era of ecosystem degradation and climate change, maximizing microbial functions in agroecosystems has become a prerequisite for the future of global agriculture, however, managing species-rich communities of plant-associated microbiomes remains a major challenge.
Journal ArticleDOI
Biodiversity and species competition regulate the resilience of microbial biofilm community.
Kai Feng,Zhaojing Zhang,Zhaojing Zhang,Weiwei Cai,Weiwei Cai,Wenzong Liu,Meiying Xu,Huaqun Yin,Aijie Wang,Zhili He,Zhili He,Ye Deng +11 more
TL;DR: This study investigated the resilience of biofilm communities with a gradient of diversity, and explored the relationship between biodiversity and stability in response to a pH shock, showing that all bioreactors could recover to stable performance after pH disturbance.
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Environmental stress destabilizes microbial networks.
Damian J. Hernandez,Aaron S. David,Aaron S. David,Eric S. Menges,Christopher A. Searcy,Michelle E. Afkhami +5 more
TL;DR: In this paper, the authors present the first evidence that naturally-occurring microbiomes display network properties characteristic of unstable communities when under persistent stress, showing that prokaryotic and fungal diversity decline in high stress, and negative:positive cohesion have a clear negative relationship with environmental stress.
References
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