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Dynamics and diversity in autophagy mechanisms: lessons from yeast

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TLDR
The discovery of autophagy in yeast and the genetic tractability of this organism have allowed us to identify genes that are responsible for this process, which has led to the explosive growth of this research field seen today.
Abstract
Autophagy is a fundamental function of eukaryotic cells and is well conserved from yeast to humans. The most remarkable feature of autophagy is the synthesis of double membrane-bound compartments that sequester materials to be degraded in lytic compartments, a process that seems to be mechanistically distinct from conventional membrane traffic. The discovery of autophagy in yeast and the genetic tractability of this organism have allowed us to identify genes that are responsible for this process, which has led to the explosive growth of this research field seen today. Analyses of autophagy-related (Atg) proteins have unveiled dynamic and diverse aspects of mechanisms that underlie membrane formation during autophagy.

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Journal ArticleDOI

Mitophagy is primarily due to alternative autophagy and requires the MAPK1 and MAPK14 signaling pathways.

TL;DR: It is concluded that mitophagy in mammalian cells predominantly occurs through an alternative autophagy pathway, requiring the MAPK1 and MAPK14 signaling pathways.
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OATL1, a novel autophagosome-resident Rab33B-GAP, regulates autophagosomal maturation

TL;DR: The GAP activity of OATL1, which is recruited to autophagosomes by Atg8, regulates autophosome–lysosome fusion.
Journal ArticleDOI

The retrograde response: when mitochondrial quality control is not enough.

TL;DR: It is apparent that mitochondrial quality control constitutes a complex network of processes, whose full understanding will require a systems approach.
Journal ArticleDOI

Hsp70 – a master regulator in protein degradation

TL;DR: Proteostasis, the controlled balance of protein synthesis, folding, assembly, trafficking and degradation, is a paramount necessity for cell homeostasis and the fate of an Hsp70 substrate is dictated by the combination of partners (cochaperones and other chaperones that interact with HSp70 in a given cell context.
Journal ArticleDOI

Autophagy: More Than a Nonselective Pathway

TL;DR: The regulation and mechanism of these selective types of autophagy are just starting to unveil, but what it is already clearly emerging is that structures targeted to destruction are accurately enwrapped by autophagosomes through the action of specific receptors and adaptors.
References
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Journal ArticleDOI

Autophagy fights disease through cellular self-digestion

TL;DR: Understanding autophagy may ultimately allow scientists and clinicians to harness this process for the purpose of improving human health, and to play a role in cell death.
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TOR signaling in growth and metabolism.

TL;DR: The physiological consequences of mammalianTORC1 dysregulation suggest that inhibitors of mammalian TOR may be useful in the treatment of cancer, cardiovascular disease, autoimmunity, and metabolic disorders.
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p62/SQSTM1 Binds Directly to Atg8/LC3 to Facilitate Degradation of Ubiquitinated Protein Aggregates by Autophagy

TL;DR: It is demonstrated that the previously reported aggresome-like induced structures containing ubiquitinated proteins in cytosolic bodies are dependent on p62 for their formation and p62 is required both for the formation and the degradation of polyubiquitin-containing bodies by autophagy.
Journal ArticleDOI

Autophagy: process and function

TL;DR: In this review, the process of autophagy is summarized, and the role of autophileagy is discussed in a process-based manner.
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