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Dynamics and diversity in autophagy mechanisms: lessons from yeast

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TLDR
The discovery of autophagy in yeast and the genetic tractability of this organism have allowed us to identify genes that are responsible for this process, which has led to the explosive growth of this research field seen today.
Abstract
Autophagy is a fundamental function of eukaryotic cells and is well conserved from yeast to humans. The most remarkable feature of autophagy is the synthesis of double membrane-bound compartments that sequester materials to be degraded in lytic compartments, a process that seems to be mechanistically distinct from conventional membrane traffic. The discovery of autophagy in yeast and the genetic tractability of this organism have allowed us to identify genes that are responsible for this process, which has led to the explosive growth of this research field seen today. Analyses of autophagy-related (Atg) proteins have unveiled dynamic and diverse aspects of mechanisms that underlie membrane formation during autophagy.

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Structural insights into the interaction and disease mechanism of neurodegenerative disease-associated optineurin and TBK1 proteins

TL;DR: The study provides mechanistic insights into those currently known disease-causing optineurin and TBK1 mutations found in patients and reveals a general binding mode between TBK 1 and its associated adaptor proteins.
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Autophagy in acute leukemias: a double-edged sword with important therapeutic implications.

TL;DR: Autophagy plays an important role in the regulation of numerous physiological functions, including hematopoiesis, through elimination of aggregated/misfolded proteins, and damaged/superfluous organelles and could significantly contribute to improved clinical outcomes.
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Evidence for contribution of autophagy to Rubisco degradation during leaf senescence in Arabidopsis thaliana

TL;DR: The results indicate that autophagy contributes substantially to Rubisco degradation during natural leaf senescence as well as dark-promoted senescences.
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The role of Resveratrol-induced mitophagy/autophagy in peritoneal mesothelial cells inflammatory injury via NLRP3 inflammasome activation triggered by mitochondrial ROS.

TL;DR: Exposure of HPMCs to high glucose-based PD solutions resulted in ROS production, which can trigger NLRP3 activation, leading to IL-1β secretion, and resveratrol treatment induced mitophagy/autophagy via adenosine monophosphate-activated protein kinase (AMPK) activation, which may provide a potential therapeutic strategy for peritoneal inflammatory injury viaNLRP3 inflammasome activation triggered by mitochondrial ROS.
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Reconstitution reveals Ykt6 as the autophagosomal SNARE in autophagosome-vacuole fusion.

TL;DR: An in vitro reconstitution assay is developed that enables systematic discovery and dissection of the players involved in autophagosome–vacuole fusion and reveals that the R-SNARE Ykt6 is required for this process.
References
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Journal ArticleDOI

Autophagy fights disease through cellular self-digestion

TL;DR: Understanding autophagy may ultimately allow scientists and clinicians to harness this process for the purpose of improving human health, and to play a role in cell death.
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TOR signaling in growth and metabolism.

TL;DR: The physiological consequences of mammalianTORC1 dysregulation suggest that inhibitors of mammalian TOR may be useful in the treatment of cancer, cardiovascular disease, autoimmunity, and metabolic disorders.
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p62/SQSTM1 Binds Directly to Atg8/LC3 to Facilitate Degradation of Ubiquitinated Protein Aggregates by Autophagy

TL;DR: It is demonstrated that the previously reported aggresome-like induced structures containing ubiquitinated proteins in cytosolic bodies are dependent on p62 for their formation and p62 is required both for the formation and the degradation of polyubiquitin-containing bodies by autophagy.
Journal ArticleDOI

Autophagy: process and function

TL;DR: In this review, the process of autophagy is summarized, and the role of autophileagy is discussed in a process-based manner.
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