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Open AccessJournal ArticleDOI

Exome sequencing identifies recurrent somatic mutations in EIF1AX and SF3B1 in uveal melanoma with disomy 3.

TLDR
Using exome sequencing, recurrent somatic mutations in EIF1AX and SF3B1 are identified occurring in uveal melanomas with disomy 3, which rarely metastasize and are associated with poor prognosis.
Abstract
Michael Zeschnigk and colleagues identify recurrent somatic mutations of EIF1AX and SF3B1 in uveal melanomas with disomy 3. The EIF1AX mutations specifically alter the N-terminal tail of the protein and were found exclusively in tumors lacking SF3B1 mutations.

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Book ChapterDOI

Clinical/Commercial Genetic Testing in UM

TL;DR: The science behind the tests, the significance of the reported test results, and a look at the future of cytogenetic analysis of the tumor DNA are explained.

Ocular melanocytes respond to oncogenic GNAQQ209L differently compared to epidermal and dermal melanocytes in mice

TL;DR: .........................................................................
Posted ContentDOI

Analytical validation and performance of a 7-gene next-generation sequencing panel in uveal melanoma

TL;DR: Katherina Maria Alsina Castle Biosciences Inc Lauren M Sholl Castle bioscience Inc Kyle R Covington Castle B biosciences INC Suzette M Arnal Castle BiosisciencesInc Michael M Durante University of Miami Bascom Palmer Eye Institute
References
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Journal ArticleDOI

Fast and accurate short read alignment with Burrows–Wheeler transform

TL;DR: Burrows-Wheeler Alignment tool (BWA) is implemented, a new read alignment package that is based on backward search with Burrows–Wheeler Transform (BWT), to efficiently align short sequencing reads against a large reference sequence such as the human genome, allowing mismatches and gaps.
Journal ArticleDOI

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

TL;DR: The Integrative Genomics Viewer (IGV) is a high-performance viewer that efficiently handles large heterogeneous data sets, while providing a smooth and intuitive user experience at all levels of genome resolution.
Journal ArticleDOI

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

TL;DR: A suite of techniques, based on ribosome profiling, are presented to provide genome-wide maps of protein synthesis as well as a pulse-chase strategy for determining rates of translation elongation, revealing an unanticipated complexity to mammalian proteomes.
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