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Open AccessJournal ArticleDOI

Exome sequencing identifies recurrent somatic mutations in EIF1AX and SF3B1 in uveal melanoma with disomy 3.

TLDR
Using exome sequencing, recurrent somatic mutations in EIF1AX and SF3B1 are identified occurring in uveal melanomas with disomy 3, which rarely metastasize and are associated with poor prognosis.
Abstract
Michael Zeschnigk and colleagues identify recurrent somatic mutations of EIF1AX and SF3B1 in uveal melanomas with disomy 3. The EIF1AX mutations specifically alter the N-terminal tail of the protein and were found exclusively in tumors lacking SF3B1 mutations.

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Focus on cutaneous and uveal melanoma specificities

TL;DR: Hypotheses to explain the differences in tumorigenic processes and genetic alterations and tumor biology between CM and UM are developed and might provide important clues for research avenues and the identification of actionable vulnerabilities suitable for the development of new therapeutic strategies for metastatic UM.
Journal ArticleDOI

SF3b1 mutations associated with myelodysplastic syndromes alter the fidelity of branchsite selection in yeast.

TL;DR: It is proposed that SF3b1 functions to stabilize weak U2/BS duplexes to drive spliceosome assembly and splicing to support a model wherein conformational changes in SF3B1 promote U2 association with the BS independently of the action of the DEAD-box ATPase Prp5.
Journal ArticleDOI

Oncogenic G Protein GNAQ Induces Uveal Melanoma and Intravasation in Mice

TL;DR: The first transgenic mouse model of uveal melanoma is introduced, which develops cancers induced by expression of oncogenic GNAQ(Q209L) under control of the Rosa26 promoter, and provides suggestive evidence of a selective advantage for increased GNAZ(Q 209L) expression in human tumors.
Journal ArticleDOI

Uveal Melanoma: Current Trends in Diagnosis and Management.

TL;DR: Prognosis can be most accurately predicted by genetic profiling of fine needle aspiration biopsy of the tumor before the treatment, and high-risk patients can now be identified for clinical trials that may lead to target-based therapies for metastatic diseases and adjuvant therapy which aims to prevent metastatic disease.
References
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Journal ArticleDOI

Fast and accurate short read alignment with Burrows–Wheeler transform

TL;DR: Burrows-Wheeler Alignment tool (BWA) is implemented, a new read alignment package that is based on backward search with Burrows–Wheeler Transform (BWT), to efficiently align short sequencing reads against a large reference sequence such as the human genome, allowing mismatches and gaps.
Journal ArticleDOI

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

TL;DR: The Integrative Genomics Viewer (IGV) is a high-performance viewer that efficiently handles large heterogeneous data sets, while providing a smooth and intuitive user experience at all levels of genome resolution.
Journal ArticleDOI

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

TL;DR: A suite of techniques, based on ribosome profiling, are presented to provide genome-wide maps of protein synthesis as well as a pulse-chase strategy for determining rates of translation elongation, revealing an unanticipated complexity to mammalian proteomes.
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