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ggplot2: Elegant Graphics for Data Analysis

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TLDR
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics.
Abstract
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics. With ggplot2, its easy to: produce handsome, publication-quality plots, with automatic legends created from the plot specification superpose multiple layers (points, lines, maps, tiles, box plots to name a few) from different data sources, with automatically adjusted common scales add customisable smoothers that use the powerful modelling capabilities of R, such as loess, linear models, generalised additive models and robust regression save any ggplot2 plot (or part thereof) for later modification or reuse create custom themes that capture in-house or journal style requirements, and that can easily be applied to multiple plots approach your graph from a visual perspective, thinking about how each component of the data is represented on the final plot. This book will be useful to everyone who has struggled with displaying their data in an informative and attractive way. You will need some basic knowledge of R (i.e. you should be able to get your data into R), but ggplot2 is a mini-language specifically tailored for producing graphics, and youll learn everything you need in the book. After reading this book youll be able to produce graphics customized precisely for your problems,and youll find it easy to get graphics out of your head and on to the screen or page.

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Journal ArticleDOI

Evolution of US maize (Zea mays L.) root architectural and anatomical phenes over the past 100 years corresponds to increased tolerance of nitrogen stress

TL;DR: Comprehensive analysis of maize root phenotypes over the past century indicates that they have evolved to be more efficient in acquiring nitrogen.
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Wheat straw-derived biochar amendment stimulated N2O emissions from rice paddy soils by regulating the amoA genes of ammonia-oxidizing bacteria

TL;DR: In this paper, the authors evaluated how biochar amendment affects N2O production and emissions in paddy soil, and found that 4% biochar significantly increased emissions from N-unfertilized and fertilized soils during the 45-day incubation, by 291% and 256%, respectively.
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MiDAS 3: An ecosystem-specific reference database, taxonomy and knowledge platform for activated sludge and anaerobic digesters reveals species-level microbiome composition of activated sludge.

TL;DR: The MiDAS 3 database was used to analyze the microbiome in 20 Danish wastewater treatment plants with nutrient removal, using full-length 16S rRNA gene amplicon sequence variants derived from activated sludge and anaerobic digester systems in Denmark, providing a new and much-needed tool for microbiome research.
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Motion-related artifacts in structural brain images revealed with independent estimates of in-scanner head motion.

TL;DR: A procedure was adopted to “flag” individuals exhibiting excessive head movement during fMRI or poor T1w quality rating, and the flagging procedure reliably reduced the influence of head motion on estimates of gray matter thickness across the cortical surface.
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Short- and long-term labile soil carbon and nitrogen dynamics reflect management and predict corn agronomic performance

TL;DR: Wander et al. as discussed by the authors used the pre-sidress nitrate test (PSNT) and leaf chlorophyll content (CPC) to predict soil N availability.
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