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ggplot2: Elegant Graphics for Data Analysis
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TLDR
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics.Abstract:
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics. With ggplot2, its easy to: produce handsome, publication-quality plots, with automatic legends created from the plot specification superpose multiple layers (points, lines, maps, tiles, box plots to name a few) from different data sources, with automatically adjusted common scales add customisable smoothers that use the powerful modelling capabilities of R, such as loess, linear models, generalised additive models and robust regression save any ggplot2 plot (or part thereof) for later modification or reuse create custom themes that capture in-house or journal style requirements, and that can easily be applied to multiple plots approach your graph from a visual perspective, thinking about how each component of the data is represented on the final plot. This book will be useful to everyone who has struggled with displaying their data in an informative and attractive way. You will need some basic knowledge of R (i.e. you should be able to get your data into R), but ggplot2 is a mini-language specifically tailored for producing graphics, and youll learn everything you need in the book. After reading this book youll be able to produce graphics customized precisely for your problems,and youll find it easy to get graphics out of your head and on to the screen or page.read more
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Journal ArticleDOI
Regional pest suppression associated with widespread Bt maize adoption benefits vegetable growers.
Galen P. Dively,P. Dilip Venugopal,Dick Bean,Joanne Whalen,Kristian Holmstrom,Thomas P. Kuhar,Hélène Doughty,Terry W. Patton,William Cissel,William D. Hutchison +9 more
TL;DR: It is demonstrated that vegetable growers benefit via decreased crop damage and insecticide applications in relation to pest suppression in the Mid-Atlantic United States, and the positive impacts identified here expand on the reported ecological effects of Bt adoption.
Journal ArticleDOI
Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation.
Kyong-Rim Kieffer-Kwon,Keisuke Nimura,Suhas S.P. Rao,Suhas S.P. Rao,Jianliang Xu,Seolkyoung Jung,Aleksandra Pekowska,Marei Dose,Evan Stevens,Ewy Mathé,Peng Dong,Su Chen Huang,Maria Aurelia Ricci,Laura Baranello,Ying Zheng,Francesco Tomassoni Ardori,Wolfgang Resch,Diana A. Stavreva,Steevenson Nelson,Michael J. McAndrew,Adriel Casellas,Elizabeth H. Finn,Charles Gregory,Brian Glenn St Hilaire,Steven M. Johnson,Wendy Dubois,Maria Pia Cosma,Eric Batchelor,David Levens,Robert D. Phair,Tom Misteli,Lino Tessarollo,Gordon L. Hager,Melike Lakadamyali,Zhe Liu,Monique Floer,Hari Shroff,Erez Lieberman Aiden,Rafael Casellas +38 more
TL;DR: The nature and transcriptional impact of chromatin decondensation is defined and an unexpected role for Myc is revealed in the establishment of nuclear topology in mammalian cells.
Journal ArticleDOI
Rapid publication-ready MS-Word tables for one-way ANOVA
TL;DR: New and user-friendly software to perform statistical analysis and generate publication-ready MS-Word tables for one-way ANOVA are expected to facilitate research in agriculture, biomedicine, and other fields of life sciences.
Journal ArticleDOI
Osteoclasts recycle via osteomorphs during RANKL-stimulated bone resorption
Michelle M. McDonald,Michelle M. McDonald,Weng Hua Khoo,Weng Hua Khoo,Pei Ying Ng,Ya Xiao,Jad Zamerli,Peter Thatcher,Wunna Kyaw,Karrnan Pathmanandavel,Abigail K. Grootveld,Imogen Moran,Danyal Butt,Akira Nguyen,Alexander P. Corr,Alexander P. Corr,Sean C. Warren,Maté Biro,Natalie C. Butterfield,Siobhan E. Guilfoyle,Davide Komla-Ebri,Michael R.G. Dack,Hannah F. Dewhurst,John G. Logan,Yongxiao Li,Sindhu T. Mohanty,Sindhu T. Mohanty,Niall M. Byrne,Niall M. Byrne,Rachael L. Terry,Rachael L. Terry,Marija K. Simic,Marija K. Simic,Ryan C. Chai,Julian M.W. Quinn,Julian M.W. Quinn,Scott E. Youlten,Jessica A. Pettitt,David Abi-Hanna,David Abi-Hanna,Rohit Jain,Rohit Jain,Wolfgang Weninger,Wolfgang Weninger,Wolfgang Weninger,Mischa Lundberg,Mischa Lundberg,Shuting Sun,F H Ebetino,Paul Timpson,Woei Ming Lee,Paul A. Baldock,Paul A. Baldock,Michael J. Rogers,Michael J. Rogers,Robert Brink,Robert Brink,Graham R. Williams,J. H. Duncan Bassett,John P. Kemp,John P. Kemp,Nathan J. Pavlos,Peter I. Croucher,Peter I. Croucher,Tri Giang Phan,Tri Giang Phan +65 more
TL;DR: This article showed that osteomorphs are transcriptionally distinct from osteoclasts and macrophages and express a number of non-canonical osteoclast genes that are associated with structural and functional bone phenotypes when deleted in mice.
Journal ArticleDOI
Design of synthetic bacterial communities for predictable plant phenotypes.
Sur Herrera Paredes,Tianxiang Gao,Theresa F. Law,Omri M. Finkel,Tatiana S. Mucyn,Paulo José Pereira Lima Teixeira,Isai Salas González,Meghan E. Feltcher,Matthew J. Powers,Elizabeth A. Shank,Corbin D. Jones,Vladimir Jojic,Jeffery L. Dangl,Gabriel Castrillo +13 more
TL;DR: It is demonstrated that plant–bacterium binary-association assays inform the design of small synthetic communities with predictable phenotypes in the host and that it is possible to infer causal relationships between microbiota membership and host phenotypes and to use these inferences to rationally design novel communities.