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ggplot2: Elegant Graphics for Data Analysis

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TLDR
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics.
Abstract
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics. With ggplot2, its easy to: produce handsome, publication-quality plots, with automatic legends created from the plot specification superpose multiple layers (points, lines, maps, tiles, box plots to name a few) from different data sources, with automatically adjusted common scales add customisable smoothers that use the powerful modelling capabilities of R, such as loess, linear models, generalised additive models and robust regression save any ggplot2 plot (or part thereof) for later modification or reuse create custom themes that capture in-house or journal style requirements, and that can easily be applied to multiple plots approach your graph from a visual perspective, thinking about how each component of the data is represented on the final plot. This book will be useful to everyone who has struggled with displaying their data in an informative and attractive way. You will need some basic knowledge of R (i.e. you should be able to get your data into R), but ggplot2 is a mini-language specifically tailored for producing graphics, and youll learn everything you need in the book. After reading this book youll be able to produce graphics customized precisely for your problems,and youll find it easy to get graphics out of your head and on to the screen or page.

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TNMplot.com: a web tool for the comparison of gene expression in normal, tumor and metastatic tissues

Aron Bartha, +1 more
- 11 Nov 2020 - 
TL;DR: An integrated database using available transcriptome-level datasets and a web-platform enabling mining of this database by comparing normal, tumor and metastatic data across all genes in real time are established.
Journal ArticleDOI

Benchmarking common quantification strategies for large-scale phosphoproteomics.

TL;DR: The authors compare performance and parameters of phosphoproteome quantification by LFQ, SILAC, and MS2-/MS3-based TMT and introduce a TMT-adapted algorithm for calculating phosphorylation site stoichiometry, showing that such applications benefit from the high accuracy of MS3- based TMT.
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LC3-Associated Phagocytosis in Myeloid Cells Promotes Tumor Immune Tolerance.

TL;DR: It is found that the anti-tumor effects of LAP impairment require tumor-infiltrating T cells, dependent upon STING and the type I interferon response, and autophagy proteins in the myeloid cells of the tumor microenvironment contribute to immune suppression of T lymphocytes by effecting LAP.
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dlexDB : eine lexikalische Datenbank für die psychologische und linguistische Forschung

TL;DR: In this paper, a lexikalischen Datenbank dlexDB stelle wir der psychologischen und linguistischen Forschung im World Wide Web online statistische Kennwerte fur eine Vielzahl von verarbeitungsrelevanten Merkmalen von Wortern zur Verfugung.
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