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ggplot2: Elegant Graphics for Data Analysis
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TLDR
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics.Abstract:
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics. With ggplot2, its easy to: produce handsome, publication-quality plots, with automatic legends created from the plot specification superpose multiple layers (points, lines, maps, tiles, box plots to name a few) from different data sources, with automatically adjusted common scales add customisable smoothers that use the powerful modelling capabilities of R, such as loess, linear models, generalised additive models and robust regression save any ggplot2 plot (or part thereof) for later modification or reuse create custom themes that capture in-house or journal style requirements, and that can easily be applied to multiple plots approach your graph from a visual perspective, thinking about how each component of the data is represented on the final plot. This book will be useful to everyone who has struggled with displaying their data in an informative and attractive way. You will need some basic knowledge of R (i.e. you should be able to get your data into R), but ggplot2 is a mini-language specifically tailored for producing graphics, and youll learn everything you need in the book. After reading this book youll be able to produce graphics customized precisely for your problems,and youll find it easy to get graphics out of your head and on to the screen or page.read more
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Journal ArticleDOI
Food for Pollinators: Quantifying the Nectar and Pollen Resources of Urban Flower Meadows
Damien M. Hicks,Pierre Ouvrard,Pierre Ouvrard,Katherine C. R. Baldock,Mathilde Baude,Mathilde Baude,Mark A. Goddard,William E. Kunin,Nadine Mitschunas,Nadine Mitschunas,Jane Memmott,Helen Morse,Maria Nikolitsi,Lynne M. Osgathorpe,Simon G. Potts,Kirsty M. Robertson,Anna V. Scott,Frazer Sinclair,Frazer Sinclair,Duncan B. Westbury,Graham N. Stone +20 more
TL;DR: In this paper, the authors used quantitative surveys of over 2 million flowers to estimate the nectar and pollen resources offered by two exemplar commercial seed mixes (one annual, one perennial) and associated weeds grown as 300m2 meadows across four UK cities, sampled at six time points between May and September 2013.
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Similar neural responses predict friendship.
TL;DR: Evidence is shown for neural homophily: neural responses when viewing audiovisual movies are exceptionally similar among friends, and that similarity decreases with increasing distance in a real-world social network.
Journal ArticleDOI
gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler.
TL;DR: The accompanying R package, gprofiler2, developed to facilitate programmatic access to g:Profiler computations and databases via REST API, provides an easy-to-use functionality that enables researchers to incorporate functional enrichment analysis into automated analysis pipelines written in R.
Journal ArticleDOI
Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing.
Andrei Prodan,Valentina Tremaroli,Harald Brolin,Aeilko H. Zwinderman,Max Nieuwdorp,Evgeni Levin +5 more
TL;DR: In this article, the authors compared six bioinformatic pipelines for the analysis of amplicon sequence data: three OTU-level flows (QIIME-uclust, MOTHUR, and USEARCH-UPARSE) and three ASV-level (DADA2, Qiime2-Deblur, and Uplabel-UNOISE3).
Journal ArticleDOI
Omalizumab facilitates rapid oral desensitization for peanut allergy
Andrew J. MacGinnitie,Rima Rachid,Hana Gragg,Sara V. Little,Paul R Lakin,Antonella Cianferoni,Jennifer Heimall,Melanie M. Makhija,Rachel G. Robison,R. Sharon Chinthrajah,John Lee,Jennifer S. LeBovidge,Tina Dominguez,Courtney Rooney,Megan Lewis,Jennifer Koss,Elizabeth Burke-Roberts,Kimberly Chin,Tanya Logvinenko,Jacqueline A. Pongracic,Dale T. Umetsu,Jonathan M. Spergel,Kari C. Nadeau,Lynda C. Schneider +23 more
TL;DR: Omalizumab allows subjects with peanut allergy to be rapidly desensitized over as little as 8 weeks of peanut oral immunotherapy, and in the majority of subjects, this desensitization is sustained after omalizuab is discontinued.