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ggplot2: Elegant Graphics for Data Analysis
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TLDR
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics.Abstract:
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics. With ggplot2, its easy to: produce handsome, publication-quality plots, with automatic legends created from the plot specification superpose multiple layers (points, lines, maps, tiles, box plots to name a few) from different data sources, with automatically adjusted common scales add customisable smoothers that use the powerful modelling capabilities of R, such as loess, linear models, generalised additive models and robust regression save any ggplot2 plot (or part thereof) for later modification or reuse create custom themes that capture in-house or journal style requirements, and that can easily be applied to multiple plots approach your graph from a visual perspective, thinking about how each component of the data is represented on the final plot. This book will be useful to everyone who has struggled with displaying their data in an informative and attractive way. You will need some basic knowledge of R (i.e. you should be able to get your data into R), but ggplot2 is a mini-language specifically tailored for producing graphics, and youll learn everything you need in the book. After reading this book youll be able to produce graphics customized precisely for your problems,and youll find it easy to get graphics out of your head and on to the screen or page.read more
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Journal ArticleDOI
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
Matthew B. Hufford,Arun S. Seetharam,Margaret R. Woodhouse,Kapeel Chougule,Shujun Ou,Jianing Liu,William A. Ricci,Tingting Guo,Andrew Olson,Yinjie Qiu,Rafael Della Coletta,Silas Tittes,Asher I. Hudson,Alexandre P. Marand,Sharon Wei,Zhenyuan Lu,Bo Wang,Marcela K. Tello-Ruiz,Rebecca D. Piri,Na Wang,Dong Won Kim,Yibing Zeng,Christine H. O’Connor,Xianran Li,Amanda M. Gilbert,Erin Baggs,Ksenia V. Krasileva,John L. Portwood,Ethalinda K. S. Cannon,Carson M. Andorf,Nancy Manchanda,Samantha J. Snodgrass,David E. Hufnagel,David E. Hufnagel,Qiuhan Jiang,Sarah Pedersen,Michael Syring,David Kudrna,Victor Llaca,Kevin Fengler,Robert J. Schmitz,Jeffrey Ross-Ibarra,Jianming Yu,Jonathan I. Gent,Candice N. Hirsch,Doreen Ware,Doreen Ware,R. Kelly Dawe +47 more
TL;DR: In this article, de novo genome assemblies, transcriptomes, annotations, and methylomes for the 26 inbreds that serve as the founders for the maize nested association mapping population were reported.
Journal ArticleDOI
Transcriptional regulation of nitrogen-associated metabolism and growth
Allison Gaudinier,Joel Rodriguez-Medina,Lifang Zhang,Andrew Olson,Christophe Liseron-Monfils,Anne-Maarit Bågman,Jessica Foret,Shane E. Abbitt,Michelle Tang,Baohua Li,Daniel E. Runcie,Daniel J. Kliebenstein,Daniel J. Kliebenstein,Bo Shen,Mary J. Frank,Doreen Ware,Doreen Ware,Siobhan M. Brady +17 more
TL;DR: The yeast one-hybrid network for nitrogen-associated metabolism in Arabidopsis reveals the transcription factors that regulate the architecture of root and shoot systems under conditions of changing nitrogen availability.
Journal ArticleDOI
Natural rice rhizospheric microbes suppress rice blast infections
Carla Spence,Carla Spence,Emily Alff,Emily Alff,Cameron Johnson,Cassandra Ramos,Nicole M. Donofrio,Venkatesan Sundaresan,Harsh P. Bais,Harsh P. Bais +9 more
TL;DR: Out of 11 bacteria isolated from rice soil, pseudomonad EA105 most effectively inhibited the growth and appressoria formation of M. oryzae through a mechanism that is independent of cyanide production, ultimately resulting in fewer blast lesions.
Journal ArticleDOI
Analyzing trend and forecasting of rainfall changes in India using non-parametrical and machine learning approaches.
Bushra Praveen,Swapan Talukdar,Shahfahad,Susanta Mahato,Jayanta Mondal,Pritee Sharma,Abu Reza Md. Towfiqul Islam,Atiqur Rahman +7 more
TL;DR: The results derived from ECMWF ERA5 reanalysis data exhibit that increasing/decreasing precipitation convective rate, elevated low cloud cover and inadequate vertically integrated moisture divergence might have influenced on change of rainfall in India.
Journal ArticleDOI
stratag: An r package for manipulating, summarizing and analysing population genetic data.
TL;DR: The r package stratag is introduced as a user‐friendly population genetics toolkit that provides easy access to a suite of standard genetic summaries as well as the ability to rapidly manipulate stratified genetic data for custom analyses.