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ggplot2: Elegant Graphics for Data Analysis
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TLDR
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics.Abstract:
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics. With ggplot2, its easy to: produce handsome, publication-quality plots, with automatic legends created from the plot specification superpose multiple layers (points, lines, maps, tiles, box plots to name a few) from different data sources, with automatically adjusted common scales add customisable smoothers that use the powerful modelling capabilities of R, such as loess, linear models, generalised additive models and robust regression save any ggplot2 plot (or part thereof) for later modification or reuse create custom themes that capture in-house or journal style requirements, and that can easily be applied to multiple plots approach your graph from a visual perspective, thinking about how each component of the data is represented on the final plot. This book will be useful to everyone who has struggled with displaying their data in an informative and attractive way. You will need some basic knowledge of R (i.e. you should be able to get your data into R), but ggplot2 is a mini-language specifically tailored for producing graphics, and youll learn everything you need in the book. After reading this book youll be able to produce graphics customized precisely for your problems,and youll find it easy to get graphics out of your head and on to the screen or page.read more
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Journal ArticleDOI
Reduced functional segregation between the default mode network and the executive control network in healthy older adults: A longitudinal study.
TL;DR: This work found progressive loss of functional specialization with ageing, evidenced by a decline in intra-network FC within the executive control (ECN) and default mode networks (DMN) among healthy older adults.
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Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells.
Mark F Sabbagh,Jacob S Heng,Chongyuan Luo,Rosa Castanon,Joseph R. Nery,Amir Rattner,Loyal A. Goff,Joseph R. Ecker,Jeremy Nathans +8 more
TL;DR: Analysis of transcriptome, accessible chromatin, and DNA methylome landscapes from mouse brain, liver, lung, and kidney ECs reveals both shared and organ-specific EC regulatory networks.
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Paleolithic to Bronze Age Siberians Reveal Connections with First Americans and across Eurasia
He Yu,Maria A. Spyrou,Marina K. Karapetian,Svetlana Shnaider,Rita Radzevičiūtė,Kathrin Nägele,Gunnar U. Neumann,Sandra Penske,Jana Zech,Mary Lucas,Petrus LeRoux,Patrick Roberts,G.D. Pavlenok,Alexandra P. Buzhilova,Cosimo Posth,Cosimo Posth,Choongwon Jeong,Choongwon Jeong,Johannes Krause +18 more
TL;DR: This study demonstrates the most deeply divergent connection between Upper Paleolithic Siberians and the First Americans and reveals human and pathogen mobility across Eurasia during the Bronze Age.
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The 5300-year-old Helicobacter pylori genome of the Iceman
Frank Maixner,Ben Krause-Kyora,Dmitrij Turaev,Alexander Herbig,Michael R. Hoopmann,Janice L. Hallows,Ulrike Kusebauch,Eduard Egarter Vigl,Peter Malfertheiner,Francis Mégraud,Niall O’Sullivan,Giovanna Cipollini,Valentina Coia,Marco Samadelli,Lars Engstrand,Bodo Linz,Robert L. Moritz,Rudolf Grimm,Johannes Krause,Almut Nebel,Yoshan Moodley,Yoshan Moodley,Thomas Rattei,Albert Zink +23 more
TL;DR: The “Iceman” H. pylori is a nearly pure representative of the bacterial population of Asian origin that existed in Europe before hybridization, suggesting that the African population arrived in Europe within the past few thousand years.
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Microplastics increase impact of treated wastewater on freshwater microbial community.
Ester M. Eckert,Andrea Di Cesare,Marie Therese Kettner,Maria Arias-Andres,Diego Fontaneto,Hans-Peter Grossart,Gianluca Corno +6 more
TL;DR: Results show that microplastic particles indeed promote persistence of typical indicators of microbial anthropogenic pollution in natural waters, and substantiate that their removal from treated wastewater should be prioritised.