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ggplot2: Elegant Graphics for Data Analysis

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TLDR
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics.
Abstract
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics. With ggplot2, its easy to: produce handsome, publication-quality plots, with automatic legends created from the plot specification superpose multiple layers (points, lines, maps, tiles, box plots to name a few) from different data sources, with automatically adjusted common scales add customisable smoothers that use the powerful modelling capabilities of R, such as loess, linear models, generalised additive models and robust regression save any ggplot2 plot (or part thereof) for later modification or reuse create custom themes that capture in-house or journal style requirements, and that can easily be applied to multiple plots approach your graph from a visual perspective, thinking about how each component of the data is represented on the final plot. This book will be useful to everyone who has struggled with displaying their data in an informative and attractive way. You will need some basic knowledge of R (i.e. you should be able to get your data into R), but ggplot2 is a mini-language specifically tailored for producing graphics, and youll learn everything you need in the book. After reading this book youll be able to produce graphics customized precisely for your problems,and youll find it easy to get graphics out of your head and on to the screen or page.

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Journal ArticleDOI

Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics.

TL;DR: The microbial community across taxonomic classifications using protein-coding and small subunit rRNA genes directly extracted from the metagenomes suggests that three phyla Proteobacteria, Cyanobacteria and Bacteriodetes dominate all marine mats, but the microbial community structure between Shark Bay and Highbourne Cay marine systems appears to be distinct from each other.
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pH effects of the addition of three biochars to acidic Indonesian mineral soils

TL;DR: In this paper, the effect of increasing amounts of field-produced biochar (from cacao (Theobroma cacao), oil palm (Elaeis guineensis), and rice (Oryza sativa) husk on soil pH and cation exchange capacity was quantified.
Journal ArticleDOI

Effects of Eimeria tenella infection on chicken caecal microbiome diversity, exploring variation associated with severity of pathology

TL;DR: The results support the view that caecal microbiome dysbiosis associated with Eimeria infection contributes to disease pathology, and could be a target for intervention to mitigate the impact of coccidiosis on poultry productivity and welfare.
Journal ArticleDOI

Making data visualization more efficient and effective: a survey

TL;DR: Techniques that make data visualization more efficient and effective are surveyed, which include auto-complete an incomplete specification, to discover more interesting visualizations based on a reference visualization.
Journal ArticleDOI

A microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera

TL;DR: Recurrent acute otitis media hypothesised that healthy children with no history of AOM carry protective commensal bacteria that could be translated into a specific probiotic therapy to break the cycle of re-infection.
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