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ggplot2: Elegant Graphics for Data Analysis
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TLDR
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics.Abstract:
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics. With ggplot2, its easy to: produce handsome, publication-quality plots, with automatic legends created from the plot specification superpose multiple layers (points, lines, maps, tiles, box plots to name a few) from different data sources, with automatically adjusted common scales add customisable smoothers that use the powerful modelling capabilities of R, such as loess, linear models, generalised additive models and robust regression save any ggplot2 plot (or part thereof) for later modification or reuse create custom themes that capture in-house or journal style requirements, and that can easily be applied to multiple plots approach your graph from a visual perspective, thinking about how each component of the data is represented on the final plot. This book will be useful to everyone who has struggled with displaying their data in an informative and attractive way. You will need some basic knowledge of R (i.e. you should be able to get your data into R), but ggplot2 is a mini-language specifically tailored for producing graphics, and youll learn everything you need in the book. After reading this book youll be able to produce graphics customized precisely for your problems,and youll find it easy to get graphics out of your head and on to the screen or page.read more
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Journal ArticleDOI
Task-induced brain state manipulation improves prediction of individual traits.
TL;DR: It is shown that task-based functional connectivity better predicts intelligence-related measures than rest-based connectivity, suggesting that cognitive tasks amplify individual differences in trait-relevant circuitry.
Journal ArticleDOI
Increasing prevalence of myopia in europe and the impact of education
Katie M Williams,Geir Bertelsen,Phillippa M. Cumberland,Christian Wolfram,Virginie J. M. Verhoeven,Eleftherios Anastasopoulos,Gabriëlle H.S. Buitendijk,Audrey Cougnard-Gregoire,Catherine Creuzot-Garcher,Maja G. Erke,Ruth E Hogg,René Höhn,Pirro G. Hysi,Anthony P Khawaja,Jean-François Korobelnik,Janina S. Ried,Johannes R. Vingerling,Alain M. Bron,Jean-François Dartigues,Astrid E. Fletcher,Albert Hofman,Robert W A M Kuijpers,Robert Luben,Konrad Oxele,Fotis Topouzis,Therese von Hanno,Alireza Mirshahi,Paul J. Foster,Cornelia M. van Duijn,Norbert Pfeiffer,Cécile Delcourt,Caroline C W Klaver,Jugnoo S Rahi,Christopher J Hammond +33 more
TL;DR: Myopia is becoming more common in Europe; although education levels have increased and are associated with myopia, higher education seems to be an additive rather than explanatory factor.
Journal ArticleDOI
Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity.
Anirban Paul,Megan Crow,Ricardo Raudales,Ricardo Raudales,Miao He,Jesse Gillis,Z. Josh Huang +6 more
TL;DR: It is discovered that cardinal GABAergic neuron types are delineated by a transcriptional architecture that encodes their synaptic communication patterns and forms a multi-layered molecular scaffold along the cell membrane that may customize synaptic connectivity patterns and input-output signaling properties.
Journal ArticleDOI
Staphylococcus aureus and Staphylococcus epidermidis strain diversity underlying pediatric atopic dermatitis
Allyson L. Byrd,Allyson L. Byrd,Clay Deming,Sara K. B. Cassidy,Oliver J. Harrison,Weng-Ian Ng,Sean Conlan,Nisc Comparative Sequencing Program,Yasmine Belkaid,Julia A. Segre,Heidi H. Kong +10 more
TL;DR: Results highlight that not all Staphylococcus can be considered the same, even at the strain level, when it comes to atopic dermatitis pathogenesis, and Integrating high-resolution sequencing, culturing, and animal models demonstrated how functional differences of staphylitiscal strains may contribute to the complexity of AD disease.
Journal ArticleDOI
The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing.
Guy Barry,James Briggs,Darya P. Vanichkina,Erin M. Poth,Natalie J. Beveridge,Vikram S. Ratnu,Sam P Nayler,Katia Nones,Jianfei Hu,Timothy W. Bredy,Shinichi Nakagawa,Frank Rigo,Ryan J. Taft,Murray J. Cairns,Seth Blackshaw,Ernst J. Wolvetang,John S. Mattick,John S. Mattick,John S. Mattick +18 more
TL;DR: It is shown that long non-coding RNAs (lncRNAs) are dynamically regulated by neuronal activation, including acute downregulation of the lncRNA Gomafu, previously implicated in brain and retinal development, and that Gomafi is downregulated in post-mortem cortical gray matter from the superior temporal gyrus in SZ.