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ggplot2: Elegant Graphics for Data Analysis
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TLDR
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics.Abstract:
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics. With ggplot2, its easy to: produce handsome, publication-quality plots, with automatic legends created from the plot specification superpose multiple layers (points, lines, maps, tiles, box plots to name a few) from different data sources, with automatically adjusted common scales add customisable smoothers that use the powerful modelling capabilities of R, such as loess, linear models, generalised additive models and robust regression save any ggplot2 plot (or part thereof) for later modification or reuse create custom themes that capture in-house or journal style requirements, and that can easily be applied to multiple plots approach your graph from a visual perspective, thinking about how each component of the data is represented on the final plot. This book will be useful to everyone who has struggled with displaying their data in an informative and attractive way. You will need some basic knowledge of R (i.e. you should be able to get your data into R), but ggplot2 is a mini-language specifically tailored for producing graphics, and youll learn everything you need in the book. After reading this book youll be able to produce graphics customized precisely for your problems,and youll find it easy to get graphics out of your head and on to the screen or page.read more
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Journal ArticleDOI
Prediction of survival odds in COVID-19 by zinc, age and selenoprotein P as composite biomarker.
Raban Arved Heller,Qian Sun,Julian Hackler,Julian Seelig,Linda Seibert,Asan Cherkezov,Waldemar B. Minich,Petra Seemann,Joachim Diegmann,Maximilian Pilz,Manuel Bachmann,Alireza Ranjbar,Arash Moghaddam,Lutz Schomburg +13 more
TL;DR: It is concluded that Zn and SELENOP status within the reference ranges indicate high survival odds in COVID-19, and assumes that correcting a diagnostically proven deficit in Se and/or Zn by a personalised supplementation may support convalescence.
Journal ArticleDOI
REVIEW: On the species abundance distribution in applied ecology and biodiversity management
TL;DR: It is demonstrated that the methods reviewed herein provide tools that allow for relatively quick assessments of ecosystem health and/or the success of management prescriptions aimed at ameliorating the effects of disturbance, and that the species abundance distribution has additional applied uses beyond traditional applications in disturbance ecology.
Journal ArticleDOI
Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity.
Liesje Mommer,T. E. Anne Cotton,T. E. Anne Cotton,Jos M. Raaijmakers,Aad J. Termorshuizen,Jasper van Ruijven,Marloes Hendriks,Sophia Q. van Rijssel,Judith E. van de Mortel,Jan Willem van der Paauw,Elio Schijlen,Annemiek E. Smit-Tiekstra,Frank Berendse,Hans de Kroon,Alex J. Dumbrell +14 more
TL;DR: The hypothesis that fungal root pathogens are an important driver of biodiversity‐ecosystem functioning relationships is substantiated by strong evidence for host specificity and negative density‐dependent effects of root‐associated fungi on plant species in grasslands.
Journal ArticleDOI
What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study.
Kimberly A. Lackey,Janet E. Williams,Courtney L. Meehan,Jessica A Zachek,Elizabeth D Benda,William J. Price,James A. Foster,Daniel W. Sellen,Elizabeth W. Kamau-Mbuthia,Egidioh W. Kamundia,Samwel Mbugua,Sophie E. Moore,Sophie E. Moore,Andrew M. Prentice,Debela Gindola K,Linda J. Kvist,Gloria E. Otoo,Cristina García-Carral,Esther Jiménez,Lorena Ruiz,Juan M. Rodríguez,Rossina G. Pareja,Lars Bode,Mark A. McGuire,Michelle K. McGuire +24 more
TL;DR: The data provide additional evidence of within- and among-population differences in milk and infant fecal bacterial community membership and diversity and support for a relationship between the bacterial communities in Milk and those of the recipient infant's feces.
Journal ArticleDOI
Epidemiological characteristics of COVID-19 cases and estimates of the reproductive numbers 1 month into the epidemic, Italy, 28 January to 31 March 2020.
Flavia Riccardo,Marco Ajelli,Xanthi Andrianou,Xanthi Andrianou,Antonino Bella,Martina Del Manso,Martina Del Manso,Massimo Fabiani,Stefania Bellino,Stefano Boros,Alberto Mateo Urdiales,Alberto Mateo Urdiales,Valentina Marziano,Maria Cristina Rota,Antonietta Filia,Fortunato D'Ancona,Andrea Siddu,Ornella Punzo,Filippo Trentini,Giorgio Guzzetta,Piero Poletti,Paola Stefanelli,Maria R. Castrucci,Alessandra Ciervo,Corrado Di Benedetto,Marco Tallon,Andrea Piccioli,Silvio Brusaferro,Giovanni Rezza,Stefano Merler,Patrizio Pezzotti +30 more
TL;DR: The COVID-19 outbreak in Italy showed a clustering onset similar to the one in Wuhan, China, supporting the importance of combined non-pharmacological control measures.