Open AccessBook
ggplot2: Elegant Graphics for Data Analysis
Reads0
Chats0
TLDR
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics.Abstract:
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics. With ggplot2, its easy to: produce handsome, publication-quality plots, with automatic legends created from the plot specification superpose multiple layers (points, lines, maps, tiles, box plots to name a few) from different data sources, with automatically adjusted common scales add customisable smoothers that use the powerful modelling capabilities of R, such as loess, linear models, generalised additive models and robust regression save any ggplot2 plot (or part thereof) for later modification or reuse create custom themes that capture in-house or journal style requirements, and that can easily be applied to multiple plots approach your graph from a visual perspective, thinking about how each component of the data is represented on the final plot. This book will be useful to everyone who has struggled with displaying their data in an informative and attractive way. You will need some basic knowledge of R (i.e. you should be able to get your data into R), but ggplot2 is a mini-language specifically tailored for producing graphics, and youll learn everything you need in the book. After reading this book youll be able to produce graphics customized precisely for your problems,and youll find it easy to get graphics out of your head and on to the screen or page.read more
Citations
More filters
Journal ArticleDOI
Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales.
Matthew J. Neave,Rita Rachmawati,Liping Xun,Craig T. Michell,David G. Bourne,Amy Apprill,Christian R. Voolstra +6 more
TL;DR: This work demonstrates that both corals harbor Endozoicomonas bacteria as their prevalent symbiont, and contributes to the factors underlying microbiome specificity and adds detail to coral holobiont functioning.
Journal ArticleDOI
Molecular Pathways of Colon Inflammation Induced by Cancer Immunotherapy
Adrienne M. Luoma,Shengbao Suo,Hannah Williams,Tatyana Sharova,Keri M. Sullivan,Michael Manos,Peter Bowling,F. Stephen Hodi,Osama E. Rahma,Osama E. Rahma,Ryan J. Sullivan,Genevieve M. Boland,Jonathan A. Nowak,Stephanie K. Dougan,Michael Dougan,Guo-Cheng Yuan,Kai W. Wucherpfennig,Kai W. Wucherpfennig +17 more
TL;DR: A comprehensive single-cell analysis of immune cell populations in colitis observed a striking accumulation of CD8 T cells with highly cytotoxic and proliferative states and no evidence of regulatory T cell depletion.
Journal ArticleDOI
Standardization of terminology in dermoscopy/dermatoscopy: Results of the third consensus conference of the International Society of Dermoscopy.
Harald Kittler,Ashfaq A. Marghoob,Giuseppe Argenziano,Cristina Carrera,Clara Curiel-Lewandrowski,Rainer Hofmann-Wellenhof,Josep Malvehy,Scott W. Menzies,Susana Puig,Harold S. Rabinovitz,Wilhelm Stolz,Toshiaki Saida,H. Peter Soyer,Eliot L. Siegel,William V. Stoecker,Alon Scope,Alon Scope,Masaru Tanaka,Luc Thomas,Philipp Tschandl,Iris Zalaudek,Allan C. Halpern +21 more
TL;DR: The new consensus provides a revised framework of standardized terms to enhance the consistent use of dermoscopic terminology and proposes a dictionary of standardized Terms taking account of metaphoric and descriptive terms.
Journal ArticleDOI
Metavir 2: new tools for viral metagenome comparison and assembled virome analysis
Simon Roux,Simon Roux,Jeremy Tournayre,Jeremy Tournayre,Antoine Mahul,Didier Debroas,Didier Debroas,François Enault +7 more
TL;DR: The new features of Metavir 2 allow users to explore and analyze viromes composed of raw reads or assembled fragments through a set of adapted tools and a user-friendly interface.
Journal ArticleDOI
Population structure in the model grass Brachypodium distachyon is highly correlated with flowering differences across broad geographic areas
Ludmila Tyler,Scott J. Lee,Nelson D. Young,Gregory A. DeIulio,Elena Benavente,Michael Reagon,Jessica Sysopha,Riccardo M. Baldini,Angelo Troia,Samuel P. Hazen,Ana L. Caicedo +10 more
TL;DR: Three distinct, genetically defined populations of B. distachyon were identified and results support the feasibility of genome‐wide association studies in a model grass.