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ggplot2: Elegant Graphics for Data Analysis
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TLDR
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics.Abstract:
This book describes ggplot2, a new data visualization package for R that uses the insights from Leland Wilkisons Grammar of Graphics to create a powerful and flexible system for creating data graphics. With ggplot2, its easy to: produce handsome, publication-quality plots, with automatic legends created from the plot specification superpose multiple layers (points, lines, maps, tiles, box plots to name a few) from different data sources, with automatically adjusted common scales add customisable smoothers that use the powerful modelling capabilities of R, such as loess, linear models, generalised additive models and robust regression save any ggplot2 plot (or part thereof) for later modification or reuse create custom themes that capture in-house or journal style requirements, and that can easily be applied to multiple plots approach your graph from a visual perspective, thinking about how each component of the data is represented on the final plot. This book will be useful to everyone who has struggled with displaying their data in an informative and attractive way. You will need some basic knowledge of R (i.e. you should be able to get your data into R), but ggplot2 is a mini-language specifically tailored for producing graphics, and youll learn everything you need in the book. After reading this book youll be able to produce graphics customized precisely for your problems,and youll find it easy to get graphics out of your head and on to the screen or page.read more
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Journal ArticleDOI
An optimized algorithm for detecting and annotating regional differential methylation.
Sheng-Yong Li,Francine E. Garrett-Bakelman,Altuna Akalin,Paul Zumbo,Ross L. Levine,Bik To,Ian D. Lewis,Anna L. Brown,Richard J D'Andrea,Ari Melnick,Christopher E. Mason +10 more
TL;DR: An open-source, optimized method for determining empirically based DMRs (eDMR) from high-throughput sequence data that is applicable to enriched whole-genome methylation profiling datasets, as well as other globally enriched epigenetic modification data.
Journal ArticleDOI
SCENITH: A Flow Cytometry-Based Method to Functionally Profile Energy Metabolism with Single-Cell Resolution.
Rafael J. Argüello,Alexis J. Combes,Remy Char,Julien-Paul Gigan,Ania I. Baaziz,Evens Bousiquot,Voahirana Camosseto,Voahirana Camosseto,Bushra Samad,Jessica Tsui,Peter Yan,Sébastien Boissonneau,Dominique Figarella-Branger,Evelina Gatti,Evelina Gatti,Evelina Gatti,Emeline Tabouret,Matthew F. Krummel,Philippe Pierre,Philippe Pierre,Philippe Pierre +20 more
TL;DR: SCENITH's ability to reveal global metabolic functions and determine complex and linked immune-phenotypes in rare cell subpopulations will contribute to the information needed for evaluating therapeutic responses or patient stratification.
Journal ArticleDOI
Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations
Emiko Noguchi,Hiromi Sakamoto,Tomomitsu Hirota,Kaori Ochiai,Yoshimasa Imoto,Yoshimasa Imoto,Masafumi Sakashita,Fumitake Kurosaka,Akira Akasawa,Shigemi Yoshihara,Noriko Kanno,Yumi Yamada,Naoki Shimojo,Yoichi Kohno,Yoichi Suzuki,Mi Jin Kang,Ji Won Kwon,Soo-Jong Hong,Ken Inoue,Yu-ichi Goto,Fumio Yamashita,Takashi Asada,Hiroshi Hirose,Ikuo Saito,Shigeharu Fujieda,Nobuyuki Hizawa,Toru Sakamoto,Hironori Masuko,Yusuke Nakamura,Ichiro Nomura,Mayumi Tamari,Tadao Arinami,Teruhiko Yoshida,Hirohisa Saito,Kenji Matsumoto +34 more
TL;DR: The findings show that genetic variants in the HLA-DP locus are associated with the risk of pediatric asthma in Asian populations.
Journal ArticleDOI
Impacts of a Regional, Multi-Year, Multi-Species Coral Disease Outbreak in Southeast Florida
TL;DR: In this article, the authors examined the regional impacts of white syndrome disease on the southeast Florida stony coral population using demographic data from the Southeast Florida Coral Reef Evaluation and Monitoring Project (SECREMP).
Journal ArticleDOI
Learning What NOT to Say: The Role of Statistical Preemption and Categorization in A-Adjective Production
Jeremy K. Boyd,Adele E. Goldberg +1 more
TL;DR: This paper found that speakers resist using certain adjectives prenominally (e.g.?? the asleep man ), but are able to generalize the restriction to apply to other members of the category as well.