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mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants.

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TLDR
This paper reported on the antibody and memory B-cell responses of a cohort of 20 volunteers who received the Moderna (mRNA-1273) or Pfizer-BioNTech (BNT162b2) vaccine against SARS-CoV-2.
Abstract
Here we report on the antibody and memory B cell responses of a cohort of 20 volunteers who received the Moderna (mRNA-1273) or Pfizer–BioNTech (BNT162b2) vaccine against SARS-CoV-21–4 Eight weeks after the second injection of vaccine, volunteers showed high levels of IgM and IgG anti-SARS-CoV-2 spike protein (S) and receptor-binding-domain (RBD) binding titre Moreover, the plasma neutralizing activity and relative numbers of RBD-specific memory B cells of vaccinated volunteers were equivalent to those of individuals who had recovered from natural infection5,6 However, activity against SARS-CoV-2 variants that encode E484K-, N501Y- or K417N/E484K/N501-mutant S was reduced by a small—but significant—margin The monoclonal antibodies elicited by the vaccines potently neutralize SARS-CoV-2, and target a number of different RBD epitopes in common with monoclonal antibodies isolated from infected donors5–8 However, neutralization by 14 of the 17 most-potent monoclonal antibodies that we tested was reduced or abolished by the K417N, E484K or N501Y mutation Notably, these mutations were selected when we cultured recombinant vesicular stomatitis virus expressing SARS-CoV-2 S in the presence of the monoclonal antibodies elicited by the vaccines Together, these results suggest that the monoclonal antibodies in clinical use should be tested against newly arising variants, and that mRNA vaccines may need to be updated periodically to avoid a potential loss of clinical efficacy The Moderna (mRNA-1273) and Pfizer–BioNTech (BNT162b2) vaccines elicit anti-RBD antibodies similar to those elicited through natural infection with SARS-CoV-2, but their potent neutralizing activity was reduced or abolished by new viral variants of concern

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Vaccine breakthrough infections in veterans hospitalized with coronavirus infectious disease-2019: A case series.

TL;DR: In this article, the authors reviewed ten individuals hospitalized with vaccine breakthrough infections to identify patient risk factors and serologic responses upon admission, based on lab testing, infections were defined as acute infection or resolving/resolved infection.
Journal ArticleDOI

Vaccine breakthrough infections in veterans hospitalized with coronavirus infectious disease-2019: A case series.

TL;DR: In this paper , the authors reviewed 10 individuals hospitalized with vaccine breakthrough infections to identify patient risk factors and serologic responses upon admission, based on lab testing, infections were defined as acute infection or resolving/resolved infection.
Journal ArticleDOI

Spike-directed vaccination elicits robust spike-specific T-cell response, including to mutant strains.

TL;DR: Evaluated T cell responses in seronegative donors before and after vaccination to define responses to SARS-CoV-2 reference strain, as well as to mutations in the variant strains B.1.7 and B. 1.351, and observed enhanced Tcell responses to reference and variant Spike strains post vaccination.
Posted ContentDOI

Household transmission of SARS-CoV-2 R.1 lineage with spike E484K mutation in Japan

TL;DR: In this paper, the authors investigated SARS-CoV-2 emerging lineage harboring variants in receptor binding domain (RBD) of spike protein in Japan and found that the R.1 lineage was not globally predominant as of March 5, 2021.
Journal ArticleDOI

Rise and Fall of SARS-CoV-2 Lineage A.27 in Germany.

TL;DR: In this article, the authors report on the increasing frequency of the SARS-CoV-2 lineage A.1.27 in Germany during the first months of 2021. And they show that the A.27 lineage shows a mutational pattern typical of VOIs/VOCs, including an accumulation of amino acid substitutions in the Spike glycoprotein.
References
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Journal ArticleDOI

Features and development of Coot.

TL;DR: Coot is a molecular-graphics program designed to assist in the building of protein and other macromolecular models and the current state of development and available features are presented.
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A simple method for displaying the hydropathic character of a protein

TL;DR: A computer program that progressively evaluates the hydrophilicity and hydrophobicity of a protein along its amino acid sequence has been devised and its simplicity and its graphic nature make it a very useful tool for the evaluation of protein structures.
Journal ArticleDOI

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

TL;DR: It is shown that stochastic gradient descent (SGD) and branch-and-bound maximum likelihood optimization algorithms permit the major steps in cryo-EM structure determination to be performed in hours or minutes on an inexpensive desktop computer.
Journal ArticleDOI

Automated electron microscope tomography using robust prediction of specimen movements.

TL;DR: A new method was developed to acquire images automatically at a series of specimen tilts, as required for tomographic reconstruction, using changes in specimen position at previous tilt angles to predict the position at the current tilt angle.
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