Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species.
TLDR
The fast multipoint maximum likelihood mapping algorithm for crosses between inbred lines, introduced by Jansen et al. ( 2001), is extended for mapping in a full-sib family of an out breeding species to enable a more accurate estimation of maps in outbreeding species than current methods.Abstract:
The fast multipoint maximum likelihood mapping algorithm for crosses between inbred lines, introduced by Jansen et al. (2001), is extended for mapping in a full-sib family of an outbreeding species. The method accommodates different segregation types of markers and differences in recombination between parents. The two separate parental multipoint maximum likelihood maps are joined into an integrated map by averaging lengths over anchored segments and by interpolating or extrapolating for markers segregating in one parent only. The method is illustrated with simulated data. The method will enable a more accurate estimation of maps in outbreeding species than current methods.read more
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A heterozygous moth genome provides insights into herbivory and detoxification
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ALLMAPS: robust scaffold ordering based on multiple maps
Haibao Tang,Haibao Tang,Xingtan Zhang,Chenyong Miao,Jisen Zhang,Ray Ming,James C. Schnable,Patrick S. Schnable,Eric Lyons,Jianguo Lu +9 more
TL;DR: AllMAPS is a method capable of computing a scaffold ordering that maximizes colinearity across a collection of maps, which is robust against common mapping errors, and generates sequences that are maximally concordant with the input maps.
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A mosaic monoploid reference sequence for the highly complex genome of sugarcane
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