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Open AccessJournal ArticleDOI

Polycyclic aromatic hydrocarbons (PAHs) enriching antibiotic resistance genes (ARGs) in the soils.

TLDR
In this study, soil samples were collected from three sites in petrochemical plant that represented different pollution levels of polycyclic aromatic hydrocarbons, suggesting that PAHs could serve as one of selective stresses for greatly enriching of ARGs in the human-impacted environment.
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This article is published in Environmental Pollution.The article was published on 2017-01-01 and is currently open access. It has received 92 citations till now.

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Antibiotics in the Soil Environment-Degradation and Their Impact on Microbial Activity and Diversity.

TL;DR: The results presented in this review show that antibiotics affect soil microorganisms by changing their enzyme activity and ability to metabolize different carbon sources, as well as by altering the overall microbial biomass and the relative abundance of different groups in microbial communities.
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Impacts and Effects Indicators of Atmospheric Deposition of Major Pollutants to Various Ecosystems - A Review

TL;DR: A review of the current understanding on ecosystem and human health impacts from the atmospheric deposition of acidifying pollutants, eutrophying nitrogen (N), polycyclic aromatic hydrocarbons (PAHs), mercury (Hg), trace metals, and ozone (O3), as well as the biological indicators that have been used to assess the health of ecosystems following exposure to these pollutants is presented in this article.
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Complex pollution of antibiotic resistance genes due to beta-lactam and aminoglycoside use in aquaculture farming.

TL;DR: Analysis of ARG profiles in the sediments from a bullfrog farm demonstrated that use of the above-mentioned antibiotics led to complex pollution of ARGs not only related to beta-lactams and aminoglycoside but also to sulfonamides, tetracyclines, and macrolides.
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PAHs accelerate the propagation of antibiotic resistance genes in coastal water microbial community

TL;DR: Findings provided direct evidence that coastal microbial community exposed to PAHs might have resulted in the dissemination of ARGs and implied that a more comprehensive risk assessment ofPAHs to natural ecosystems and public health is necessary.
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Bacterial community and climate change implication affected the diversity and abundance of antibiotic resistance genes in wetlands on the Qinghai-Tibetan Plateau

TL;DR: A better understanding of the background levels of ARGs in the Qinghai-Tibetan Plateau is provided, to shed light on the influence of climate change and increased human activities on the distribution of ARG.
References
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Journal ArticleDOI

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

TL;DR: A new criterion for triggering the extension of word hits, combined with a new heuristic for generating gapped alignments, yields a gapped BLAST program that runs at approximately three times the speed of the original.
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Prodigal: prokaryotic gene recognition and translation initiation site identification

TL;DR: This work developed a new gene prediction algorithm called Prodigal (PROkaryotic DYnamic programming Gene-finding ALgorithm), which achieved good results compared to existing methods, and it is believed it will be a valuable asset to automated microbial annotation pipelines.
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KEGG for linking genomes to life and the environment

TL;DR: KEGG PATHWAY is now supplemented with a new global map of metabolic pathways, which is essentially a combined map of about 120 existing pathway maps, and the KEGG resource is being expanded to suit the needs for practical applications.
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MEGAN analysis of metagenomic data

TL;DR: MEGAN, a new computer program that allows laptop analysis of large metagenomic data sets, is introduced and provides graphical and statistical output for comparing different data sets.
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Prevention of drug access to bacterial targets: permeability barriers and active efflux

TL;DR: As the pharmaceutical industry succeeds in producing agents that can overcome specific mechanisms of bacterial resistance, less specific resistance mechanisms such as permeability barriers and multidrug active efflux may become increasingly significant in the clinical setting.
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