Soil microbial community dynamics and assembly under long-term land use change.
Dennis Goss-Souza,Dennis Goss-Souza,Lucas William Mendes,Clovis Daniel Borges,Dilmar Baretta,Siu Mui Tsai,Jorge L. M. Rodrigues,Jorge L. M. Rodrigues +7 more
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TLDR
The results indicate that the patterns of assembly and their governing processes are dependent on the land use employed after deforestation, with consequences for taxa turnover and microbial functional potential.About:
This article is published in FEMS Microbiology Ecology.The article was published on 2017-10-01 and is currently open access. It has received 66 citations till now. The article focuses on the topics: Beta diversity & Alpha diversity.read more
Citations
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Difficulty in inferring microbial community structure based on co-occurrence network approaches.
Hokuto Hirano,Kazuhiro Takemoto +1 more
TL;DR: Co-occurrence network approaches may be insufficient in interpreting species interactions in microbiome studies and the need for further careful evaluation of the validity of these much-used methods and the development of more suitable methods for inferring microbial ecological networks is highlighted.
Journal ArticleDOI
Microbiome of vineyard soils is shaped by geography and management
Emanuela Coller,Alessandro Cestaro,Roberto Zanzotti,Daniela Bertoldi,Massimo Pindo,Simone Larger,Davide Albanese,Enzo Mescalchin,Claudio Donati +8 more
TL;DR: The soil microbiota of vineyards and of neighboring permanent grassland soils in the Italian province of Trentino is characterized, and their structure and composition to location, chemical properties of the soil, and land management are correlated.
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Towards an integrative understanding of soil biodiversity
Madhav P. Thakur,Helen Phillips,Ulrich Brose,Franciska T. de Vries,Patrick Lavelle,Michel Loreau,Jérôme Mathieu,Christian Mulder,Wim H. van der Putten,Matthias C. Rillig,David A. Wardle,Elizabeth M. Bach,Marie Luise Carolina Bartz,Marie Luise Carolina Bartz,Joanne M. Bennett,Maria J. I. Briones,George G. Brown,Thibaud Decaëns,Nico Eisenhauer,Olga Ferlian,Carlos A. Guerra,Birgitta König-Ries,Alberto Orgiazzi,Kelly S. Ramirez,David J. Russell,Michiel Rutgers,Diana H. Wall,Erin K. Cameron,Erin K. Cameron +28 more
TL;DR: A systematic literature review is presented to investigate whether and how key biodiversity theories (species–energy relationship, theory of island biogeography, metacommunity theory, niche theory and neutral theory) can explain observed patterns of soil biodiversity.
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Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula.
Shawn P. Brown,Shawn P. Brown,Michael A. Grillo,Michael A. Grillo,Justin C. Podowski,Justin C. Podowski,Katy D. Heath +6 more
TL;DR: A common garden experiment with 16S rRNA gene amplicon and shotgun metagenomic sequencing is used to study the drivers of microbiome diversity and composition in three genotypes of the model legume Medicago truncatula grown in two native soil communities, demonstrating strong host filtering effects.
References
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R: A language and environment for statistical computing.
TL;DR: Copyright (©) 1999–2012 R Foundation for Statistical Computing; permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and permission notice are preserved on all copies.
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Controlling the false discovery rate: a practical and powerful approach to multiple testing
Yoav Benjamini,Yosef Hochberg +1 more
TL;DR: In this paper, a different approach to problems of multiple significance testing is presented, which calls for controlling the expected proportion of falsely rejected hypotheses -the false discovery rate, which is equivalent to the FWER when all hypotheses are true but is smaller otherwise.
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Biodiversity hotspots for conservation priorities
Norman Myers,Russell A. Mittermeier,Cristina G. Mittermeier,Gustavo A. B. da Fonseca,Jennifer Kent +4 more
TL;DR: A ‘silver bullet’ strategy on the part of conservation planners, focusing on ‘biodiversity hotspots’ where exceptional concentrations of endemic species are undergoing exceptional loss of habitat, is proposed.
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Past: paleontological statistical software package for education and data analysis
TL;DR: PAST (PAleontological STatistics) as discussed by the authors is a simple-to-use software package for executing a range of standard numerical analysis and operations used in quantitative paleontology.
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