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Open AccessJournal ArticleDOI

The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation.

TLDR
The X-linked lncRNA Firre helps to position the inactive X chromosome near the nucleolus and to preserve one of its main epigenetic features, H3K27me3, demonstrating a role in maintenance of an important epigenetic feature of the inactiveX chromosome.
Abstract
Background In mammals, X chromosome genes are present in one copy in males and two in females. To balance the dosage of X-linked gene expression between the sexes, one of the X chromosomes in females is silenced. X inactivation is initiated by upregulation of the lncRNA (long non-coding RNA) Xist and recruitment of specific chromatin modifiers. The inactivated X chromosome becomes heterochromatic and visits a specific nuclear compartment adjacent to the nucleolus.

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Journal ArticleDOI

Gene regulation by long non-coding RNAs and its biological functions.

TL;DR: A review of the mechanisms of lncRNA biogenesis, localization and functions in transcriptional, post-transcriptional and other modes of gene regulation, and their potential therapeutic applications is presented in this article.
Journal ArticleDOI

Mechanisms of long noncoding RNA function in development and disease

TL;DR: Examples illustrating the versatility of lncRNAs in gene control, development and differentiation, as well as in human disease are discussed.
Book ChapterDOI

Non-coding RNAs: Classification, Biology and Functioning

TL;DR: This chapter introduces several classes of short and long non-coding RNAs, describe their diverse roles in mammalian gene regulation and give examples for known modes of action.
Journal ArticleDOI

How do lncRNAs regulate transcription

TL;DR: Recent progress in elucidating the molecular mechanisms by which lncRNAs modulate gene expression is reviewed, including the act of lnc RNA transcription rather than the lncRNA product that appears to be regulatory.
Journal ArticleDOI

Ki-67: more than a proliferation marker.

Xiaoming Sun, +1 more
- 10 Jan 2018 - 
TL;DR: An overview of functional roles of Ki-67 across the cell cycle is presented and recent experiments that clarify its role in regulating cell cycle progression in human cells are described.
References
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Journal ArticleDOI

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

TL;DR: By following this protocol, investigators are able to gain an in-depth understanding of the biological themes in lists of genes that are enriched in genome-scale studies.
Journal ArticleDOI

An integrated encyclopedia of DNA elements in the human genome

TL;DR: The Encyclopedia of DNA Elements project provides new insights into the organization and regulation of the authors' genes and genome, and is an expansive resource of functional annotations for biomedical research.
Journal ArticleDOI

TopHat: discovering splice junctions with RNA-Seq

TL;DR: The TopHat pipeline is much faster than previous systems, mapping nearly 2.2 million reads per CPU hour, which is sufficient to process an entire RNA-Seq experiment in less than a day on a standard desktop computer.
Journal Article

An integrated encyclopedia of DNA elements in the human genome.

ENCODEConsortium
- 01 Jan 2012 - 
TL;DR: The Encyclopedia of DNA Elements project provides new insights into the organization and regulation of the authors' genes and genome, and is an expansive resource of functional annotations for biomedical research.
Journal ArticleDOI

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

TL;DR: In situ Hi-C is used to probe the 3D architecture of genomes, constructing haploid and diploid maps of nine cell types, identifying ∼10,000 loops that frequently link promoters and enhancers, correlate with gene activation, and show conservation across cell types and species.
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