C
Cheryl A. Keller
Researcher at Pennsylvania State University
Publications - 78
Citations - 6089
Cheryl A. Keller is an academic researcher from Pennsylvania State University. The author has contributed to research in topics: Chromatin & Gene. The author has an hindex of 26, co-authored 61 publications receiving 4368 citations.
Papers
More filters
Journal ArticleDOI
A comparative encyclopedia of DNA elements in the mouse genome
Feng Yue,Feng Yue,Yong Cheng,Alessandra Breschi,Jeff Vierstra,Weisheng Wu,Weisheng Wu,Tyrone Ryba,Tyrone Ryba,Richard Sandstrom,Zhihai Ma,Carrie A. Davis,Benjamin D. Pope,Yin Shen,Dmitri D. Pervouchine,Sarah Djebali,Robert E. Thurman,Rajinder Kaul,Eric Rynes,Anthony Kirilusha,Georgi K. Marinov,Brian A. Williams,Diane Trout,Henry Amrhein,Katherine I. Fisher-Aylor,Igor Antoshechkin,Gilberto DeSalvo,Lei Hoon See,Meagan Fastuca,Jorg Drenkow,Chris Zaleski,Alexander Dobin,Pablo Prieto,Julien Lagarde,Giovanni Bussotti,Andrea Tanzer,Olgert Denas,Kanwei Li,M. A. Bender,M. A. Bender,Miaohua Zhang,Rachel Byron,Mark Groudine,Mark Groudine,David McCleary,Long Pham,Zhen Ye,Samantha Kuan,Lee Edsall,Yi-Chieh Wu,Matthew D. Rasmussen,Mukul S. Bansal,Manolis Kellis,Manolis Kellis,Cheryl A. Keller,Christapher S. Morrissey,Tejaswini Mishra,Deepti Jain,Nergiz Dogan,Robert S. Harris,Philip Cayting,Trupti Kawli,Alan P. Boyle,Alan P. Boyle,Ghia Euskirchen,Anshul Kundaje,Shin Lin,Yiing Lin,Camden Jansen,Venkat S. Malladi,Melissa S. Cline,Drew T. Erickson,Vanessa M. Kirkup,Katrina Learned,Cricket A. Sloan,Kate R. Rosenbloom,Beatriz Lacerda de Sousa,Kathryn Beal,Miguel Pignatelli,Paul Flicek,Jin Lian,Tamer Kahveci,Dongwon Lee,W. James Kent,Miguel Santos,Javier Herrero,Cedric Notredame,Audra K. Johnson,Shinny Vong,Kristen Lee,Daniel Bates,Fidencio Neri,Morgan Diegel,Theresa K. Canfield,Peter J. Sabo,Matthew S. Wilken,Thomas A. Reh,Erika Giste,Anthony Shafer,Tanya Kutyavin,Eric Haugen,Douglas Dunn,Alex Reynolds,Shane Neph,Richard Humbert,R. Scott Hansen,Marella F. T. R. de Bruijn,Licia Selleri,Alexander Y. Rudensky,Steven Z. Josefowicz,Robert M. Samstein,Evan E. Eichler,Stuart H. Orkin,Dana N. Levasseur,Thalia Papayannopoulou,Kai Hsin Chang,Arthur I. Skoultchi,Srikanta Gosh,Christine M. Disteche,Piper M. Treuting,Yanli Wang,Mitchell J. Weiss,Gerd A. Blobel,Xiaoyi Cao,Sheng Zhong,Ting Wang,Peter J. Good,Rebecca F. Lowdon,Rebecca F. Lowdon,Leslie B. Adams,Leslie B. Adams,Xiao Qiao Zhou,Michael J. Pazin,Elise A. Feingold,Barbara J. Wold,James Taylor,Ali Mortazavi,Sherman M. Weissman,John A. Stamatoyannopoulos,Michael Snyder,Roderic Guigó,Thomas R. Gingeras,David M. Gilbert,Ross C. Hardison,Michael A. Beer,Bing Ren +145 more
TL;DR: The mouse ENCODE Consortium has mapped transcription, DNase I hypersensitivity, transcription factor binding, chromatin modifications and replication domains throughout the mouse genome in diverse cell and tissue types as mentioned in this paper.
Journal ArticleDOI
Expanded encyclopaedias of DNA elements in the human and mouse genomes
Jill Moore,Michael J. Purcaro,Henry Pratt,Charles B. Epstein,Noam Shoresh,Jessika Adrian,Trupti Kawli,Carrie A. Davis,Alexander Dobin,Rajinder Kaul,Jessica Halow,Eric L. Van Nostrand,Peter Freese,David U. Gorkin,David U. Gorkin,Yin Shen,Yin Shen,Yupeng He,Mark Mackiewicz,Florencia Pauli-Behn,Brian A. Williams,Ali Mortazavi,Cheryl A. Keller,Xiao-Ou Zhang,Shaimae I. Elhajjajy,Jack Huey,Diane E. Dickel,Valentina Snetkova,Xintao Wei,Xiaofeng Wang,Xiaofeng Wang,Juan Carlos Rivera-Mulia,Juan Carlos Rivera-Mulia,Joel Rozowsky,Jing Zhang,Surya B. Chhetri,Jialing Zhang,Alec Victorsen,Kevin P. White,Axel Visel,Axel Visel,Gene W. Yeo,Christopher B. Burge,Eric Lécuyer,Eric Lécuyer,David M. Gilbert,Job Dekker,John L. Rinn,Eric M. Mendenhall,Joseph R. Ecker,Manolis Kellis,Manolis Kellis,Robert J. Klein,William Stafford Noble,Anshul Kundaje,Roderic Guigó,Peggy J. Farnham,J. Michael Cherry,Richard M. Myers,Bing Ren,Bing Ren,Brenton R. Graveley,Mark Gerstein,Len A. Pennacchio,Len A. Pennacchio,Michael Snyder,Bradley E. Bernstein,Barbara J. Wold,Ross C. Hardison,Thomas R. Gingeras,John A. Stamatoyannopoulos,Zhiping Weng,Zhiping Weng,Zhiping Weng +73 more
TL;DR: The authors summarize the data produced by phase III of the Encyclopedia of DNA Elements (ENCODE) project, a resource for better understanding of the human and mouse genomes, which have produced 5,992 new experimental datasets, including systematic determinations across mouse fetal development.
Journal ArticleDOI
An encyclopedia of mouse DNA elements (Mouse ENCODE)
John A. Stamatoyannopoulos,Michael Snyder,Ross C. Hardison,Bing Ren,Thomas R. Gingeras,David M. Gilbert,Mark Groudine,M. A. Bender,Rajinder Kaul,Theresa K. Canfield,Erica Giste,Audra K. Johnson,Mia Zhang,Gayathri Balasundaram,Rachel Byron,Vaughan Roach,Peter J. Sabo,Richard Sandstrom,A Sandra Stehling,Robert E. Thurman,Sherman M. Weissman,Philip Cayting,Manoj Hariharan,Jin Lian,Yong Cheng,Stephen G. Landt,Zhihai Ma,Barbara J. Wold,Job Dekker,Gregory E. Crawford,Cheryl A. Keller,Weisheng Wu,Christopher T. Morrissey,Swathi Ashok Kumar,Tejaswini Mishra,Deepti Jain,Marta Byrska-Bishop,Daniel Blankenberg,Bryan R. Lajoie,Gaurav Jain,Amartya Sanyal,Kaun-Bei Chen,Olgert Denas,James Taylor,Gerd A. Blobel,Mitchell J. Weiss,Max Pimkin,Wulan Deng,Georgi K. Marinov,Brian A. Williams,Katherine I. Fisher-Aylor,Gilberto DeSalvo,Anthony Kiralusha,Diane Trout,Henry Amrhein,Ali Mortazavi,Lee Edsall,David McCleary,Samantha Kuan,Yin Shen,Feng Yue,Zhen Ye,Carrie A. Davis,Chris Zaleski,Sonali Jha,Chenghai Xue,Alexander Dobin,Wei Lin,Meagan Fastuca,Huaien Wang,Roderic Guigó,Sarah Djebali,Julien Lagarde,Tyrone Ryba,Takayo Sasaki,Venkat S. Malladi,Melissa S. Cline,Vanessa M. Kirkup,Katrina Learned,Kate R. Rosenbloom,W. James Kent,Elise A. Feingold,Peter J. Good,Michael J. Pazin,Rebecca F. Lowdon,Leslie B Adams +85 more
TL;DR: The Mouse E NCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome to enable a broad range of mouse genomics efforts.
Journal ArticleDOI
Regulation of GABAA receptor trafficking, channel activity, and functional plasticity of inhibitory synapses.
TL;DR: Recent progress on the classification of synaptic versus extrasynaptic receptors, the molecular composition of the postsynaptic cytoskeleton, the function of receptor-associated proteins in trafficking of GABA(A) receptors to and from synapses, and their role in post-translational signaling mechanisms that modulate the stability, density, and function of GABAA receptors in the post Synaptic membrane are summarized are summarized.
Journal ArticleDOI
Principles of regulatory information conservation between mouse and human
Yong Cheng,Zhihai Ma,Bong Hyun Kim,Weisheng Wu,Weisheng Wu,Philip Cayting,Alan P. Boyle,Vasavi Sundaram,Xiaoyun Xing,Nergiz Dogan,Jingjing Li,Ghia Euskirchen,Shin Lin,Yiing Lin,Yiing Lin,Axel Visel,Axel Visel,Axel Visel,Trupti Kawli,Xinqiong Yang,Dorrelyn Patacsil,Cheryl A. Keller,Belinda Giardine,Anshul Kundaje,Ting Wang,Len A. Pennacchio,Len A. Pennacchio,Zhiping Weng,Ross C. Hardison,Michael Snyder +29 more
TL;DR: Using the genome-wide transcription factor occupancy repertoires, associated epigenetic signals, and co-association patterns, several evolutionary principles of gene regulatory features operating since the mouse and human lineages diverged are deduced.