J
J. Rodney Brister
Researcher at National Institutes of Health
Publications - 50
Citations - 8896
J. Rodney Brister is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Virus classification & Genome. The author has an hindex of 23, co-authored 45 publications receiving 6275 citations. Previous affiliations of J. Rodney Brister include University of Florida.
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Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary,Mathew W. Wright,J. Rodney Brister,Stacy Ciufo,Diana Haddad,Richard McVeigh,Bhanu Rajput,Barbara Robbertse,Brian Smith-White,Danso Ako-adjei,Alexander Astashyn,Azat Badretdin,Yiming Bao,Olga Blinkova,Vyacheslav Brover,Vyacheslav Chetvernin,Jinna Choi,Eric Cox,Olga Ermolaeva,Catherine M. Farrell,Tamara Goldfarb,Tripti Gupta,Daniel H. Haft,Eneida L. Hatcher,Wratko Hlavina,Vinita Joardar,Vamsi K. Kodali,Wenjun Li,Donna Maglott,Patrick Masterson,Kelly M. McGarvey,Michael R. Murphy,Kathleen O'Neill,Shashikant Pujar,Sanjida H. Rangwala,Daniel Rausch,Lillian D. Riddick,Conrad L. Schoch,Andrei Shkeda,Susan S. Storz,Hanzhen Sun,Françoise Thibaud-Nissen,Igor Tolstoy,Raymond E. Tully,Anjana R. Vatsan,Craig Wallin,David Webb,Wendy Wu,Melissa J. Landrum,Avi Kimchi,Tatiana Tatusova,Michael DiCuccio,Paul Kitts,Terence Murphy,Kim D. Pruitt +54 more
TL;DR: The approach to utilizing available RNA-Seq and other data types in the authors' manual curation process for vertebrate, plant, and other species is summarized, and a new direction for prokaryotic genomes and protein name management is described.
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Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG).
Jelle Matthijnssens,Max Ciarlet,Sarah M. McDonald,Houssam Attoui,Krisztián Bányai,J. Rodney Brister,Javier Buesa,Mathew D. Esona,Mary K. Estes,Jon R. Gentsch,Miren Iturriza-Gomara,Reimar Johne,Carl D. Kirkwood,Vito Martella,Peter P. C. Mertens,Osamu Nakagomi,Viviana Parreño,Mustafizur Rahman,Franco Maria Ruggeri,Linda J. Saif,Norma Santos,Andrej Steyer,Koki Taniguchi,John T. Patton,Ulrich Desselberger,Marc Van Ranst +25 more
TL;DR: With increasing numbers of complete RV genome sequences becoming available, a standardized RV strain nomenclature system is needed, and the RCWG proposes that individual RV strains are named as follows: RV group/species of origin/country of identification/common name/year of identification /G- and P-type.
Journal ArticleDOI
Consensus statement: Virus taxonomy in the age of metagenomics
Peter Simmonds,Michael J. Adams,Mária Benkő,Mya Breitbart,J. Rodney Brister,Eric B. Carstens,Andrew J. Davison,Eric Delwart,Eric Delwart,Alexander E. Gorbalenya,Alexander E. Gorbalenya,Balázs Harrach,Roger Hull,Andrew M. Q. King,Eugene V. Koonin,Mart Krupovic,Jens H. Kuhn,Elliot J. Lefkowitz,Max L. Nibert,Richard J. Orton,Marilyn J. Roossinck,Sead Sabanadzovic,Matthew B. Sullivan,Curtis A. Suttle,Curtis A. Suttle,Robert B. Tesh,René van der Vlugt,Arvind Varsani,F. Murilo Zerbini +28 more
TL;DR: The rationale for why metagenomic sequence data should, and how it can, be incorporated into the ICTV taxonomy is considered, and present proposals that have been endorsed by the Executive Committee of the ITV.
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NCBI Viral Genomes Resource
TL;DR: The NCBI Viral Genomes Resource is a reference resource designed to bring order to this sequence shockwave and improve usability of viral sequence data.
Journal ArticleDOI
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
Ho Bin Jang,Benjamin Bolduc,Olivier Zablocki,Jens H. Kuhn,Simon Roux,Evelien M. Adriaenssens,Evelien M. Adriaenssens,J. Rodney Brister,Andrew M. Kropinski,Andrew M. Kropinski,Mart Krupovic,Rob Lavigne,Dann Turner,Matthew B. Sullivan +13 more
TL;DR: This work presents vConTACT v.2.0, a network-based application utilizing whole genome gene-sharing profiles for virus taxonomy that integrates distance-based hierarchical clustering and confidence scores for all taxonomic predictions, and applies it to analyze 15,280 Global Ocean Virome genome fragments.