M
Mark G. Poolman
Researcher at Oxford Brookes University
Publications - 48
Citations - 2595
Mark G. Poolman is an academic researcher from Oxford Brookes University. The author has contributed to research in topics: Metabolic network & Light intensity. The author has an hindex of 25, co-authored 44 publications receiving 2211 citations. Previous affiliations of Mark G. Poolman include Montana State University & University of Oxford.
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Journal ArticleDOI
A genome-scale metabolic model of Cupriavidus necator H16 integrated with TraDIS and transcriptomic data reveals metabolic insights for biotechnological applications
Nicole Pearcy,Marco Garavaglia,Th. Millat,James P Gilbert,Yo Seb Song,Hassan Hartman,Craig Woods,Claudio Tomi-Andrino,Rajesh Reddy Bommareddy,Byung-Kwan Cho,David A. Fell,Mark G. Poolman,John R. King,Klaus Winzer,Jamie Twycross,Nigel P. Minton +15 more
TL;DR: A genome-scale metabolic model of C. necator H16 is presented, which can provide useful insights for designing metabolic engineering strategies and is indicated how experimental and computational predictions can be used to improve model structure and, thus, model accuracy.
Journal ArticleDOI
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing
Christian Lieven,Moritz Emanuel Beber,Brett G. Olivier,Frank Bergmann,Meriç Ataman,Parizad Babaei,Jennifer A. Bartell,Lars M. Blank,Siddharth Chauhan,Kevin Correia,Christian Diener,Christian Diener,Andreas Dräger,Birgitta E. Ebert,Birgitta E. Ebert,Janaka N. Edirisinghe,José P. Faria,Adam M. Feist,Adam M. Feist,Georgios Fengos,Ronan M. T. Fleming,Beatriz García-Jiménez,Beatriz García-Jiménez,Vassily Hatzimanikatis,Wout van Helvoirt,Wout van Helvoirt,Christopher S. Henry,Henning Hermjakob,Markus J. Herrgård,Ali Kaafarani,Hyun Uk Kim,Zachary A. King,Steffen Klamt,Edda Klipp,Jasper J. Koehorst,Matthias König,Meiyappan Lakshmanan,Dong-Yup Lee,Dong-Yup Lee,Sang Yup Lee,Sang Yup Lee,Sunjae Lee,Sunjae Lee,Nathan E. Lewis,Filipe Liu,Hongwu Ma,Daniel Machado,Radhakrishnan Mahadevan,Paulo Maia,Adil Mardinoglu,Adil Mardinoglu,Gregory L. Medlock,Jonathan Monk,Jens Nielsen,Jens Nielsen,Lars K. Nielsen,Lars K. Nielsen,Juan Nogales,Intawat Nookaew,Intawat Nookaew,Bernhard O. Palsson,Bernhard O. Palsson,Jason A. Papin,Kiran Raosaheb Patil,Mark G. Poolman,Nathan D. Price,Osbaldo Resendis-Antonio,Anne Richelle,Isabel Rocha,Isabel Rocha,Benjamin Sanchez,Benjamin Sanchez,Peter J. Schaap,Rahuman S. Malik Sheriff,Saeed Shoaie,Saeed Shoaie,Nikolaus Sonnenschein,Bas Teusink,Paulo Vilaça,Jon Olav Vik,Judith A. H. Wodke,Joana C. Xavier,Qianqian Yuan,Maksim Zakhartsev,Cheng Zhang +84 more
TL;DR: An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Journal ArticleDOI
Substrate Utilisation and Energy Metabolism in Non-Growing Campylobacter jejuni M1cam
Emily Stoakes,George M. Savva,Ruby Coates,Noemi Tejera,Mark G. Poolman,Andrew J. Grant,John Wain,Dipali Singh +7 more
TL;DR: This work integrated phenotypic microarrays and genome-scale metabolic modelling (GSM) to investigate the survival of C. jejuni on 95 substrates and identified amino acids, organic acids and H2, as single substrates supporting survival without growth.
Journal ArticleDOI
Genome-Scale Metabolic Modelling Approach to Understand the Metabolism of the Opportunistic Human Pathogen Staphylococcus epidermidis RP62A
Teresa Díaz Díaz Calvo,Noemi Tejera,Iain McNamara,Gemma C. Langridge,John Wain,Mark G. Poolman,Dipali Singh +6 more
TL;DR: It is shown that this strain has no real substrate auxotrophies, although removal of proline from the media has the highest impact on the model and the experimental growth characteristics, and Amino acids, proline, valine, alanine, glutamate and arginine are preferred sources of energy and biomass production.
Posted ContentDOI
A Novel Algorithm to Calculate Elementary Modes: Analysis of Campylobacter jejuni Metabolism
TL;DR: In this paper , a linear programming algorithm is proposed to decompose a steady-state flux vector into a set of weighted elementary modes such that the sum of these elementary modes is equal to the original flux vector.