N
Nathan D. Price
Researcher at Institute for Systems Biology
Publications - 277
Citations - 19829
Nathan D. Price is an academic researcher from Institute for Systems Biology. The author has contributed to research in topics: Metabolic network & Population. The author has an hindex of 64, co-authored 253 publications receiving 15697 citations. Previous affiliations of Nathan D. Price include University of California, San Diego & University of Illinois at Urbana–Champaign.
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Journal ArticleDOI
Genome-scale models of microbial cells: evaluating the consequences of constraints
TL;DR: This work has shown that a constraint-based reconstruction and analysis approach provides a biochemically and genetically consistent framework for the generation of hypotheses and the testing of functions of microbial cells.
Journal ArticleDOI
A community-driven global reconstruction of human metabolism
Ines Thiele,Neil Swainston,Ronan M. T. Fleming,Andreas Hoppe,Swagatika Sahoo,Maike K. Aurich,Hulda S. Haraldsdóttir,Monica L. Mo,Ottar Rolfsson,Miranda D. Stobbe,Miranda D. Stobbe,Stefan Gretar Thorleifsson,Rasmus Agren,Christian Bölling,Sergio Bordel,Arvind K. Chavali,Paul D. Dobson,Warwick B. Dunn,Warwick B. Dunn,Lukas Endler,David Hala,Michael Hucka,Duncan Hull,Daniel Jameson,Neema Jamshidi,Jon J. Jonsson,Nick Juty,Sarah M. Keating,Intawat Nookaew,Nicolas Le Novère,Nicolas Le Novère,Naglis Malys,Naglis Malys,Alexander Mazein,Jason A. Papin,Nathan D. Price,Evgeni Selkov,Martin I. Sigurdsson,Evangelos Simeonidis,Evangelos Simeonidis,Nikolaus Sonnenschein,Kieran Smallbone,Anatoly Sorokin,Anatoly Sorokin,Johannes H. G. M. van Beek,Dieter Weichart,Igor Goryanin,Jens Nielsen,Hans V. Westerhoff,Douglas B. Kell,Pedro Mendes,Pedro Mendes,Bernhard O. Palsson,Bernhard O. Palsson +53 more
TL;DR: Recon 2, a community-driven, consensus 'metabolic reconstruction', is described, which is the most comprehensive representation of human metabolism that is applicable to computational modeling and has improved topological and functional features.
Journal ArticleDOI
The Microarray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
Leming Shi,Gregory Campbell,Wendell D. Jones,Fabien Campagne,Zhining Wen,Stephen J. Walker,Zhenqiang Su,Tzu Ming Chu,Federico Goodsaid,Lajos Pusztai,John D. Shaughnessy,André Oberthuer,Russell S. Thomas,Richard S. Paules,Mark R. Fielden,Bart Barlogie,Weijie Chen,Pan Du,Matthias Fischer,Cesare Furlanello,Brandon D. Gallas,Xijin Ge,Dalila B. Megherbi,W. Fraser Symmans,May D. Wang,John Zhang,Hans Bitter,Benedikt Brors,Pierre R. Bushel,Max Bylesjö,Minjun Chen,Jie Cheng,Jing Cheng,Jeff W. Chou,Timothy Davison,Mauro Delorenzi,Youping Deng,Viswanath Devanarayan,David J. Dix,Joaquín Dopazo,Kevin C. Dorff,Fathi Elloumi,Jianqing Fan,Shicai Fan,Xiaohui Fan,Hong Fang,Nina Gonzaludo,Kenneth R. Hess,Huixiao Hong,Jun Huan,Rafael A. Irizarry,Richard S. Judson,Dilafruz Juraeva,Samir Lababidi,Christophe G. Lambert,Li Li,Yanen Li,Zhen Li,Simon Lin,Guozhen Liu,Edward K. Lobenhofer,J. Luo,Wen Luo,Matthew N. McCall,Yuri Nikolsky,Gene Pennello,Roger Perkins,Reena Philip,Vlad Popovici,Nathan D. Price,Feng Qian,Andreas Scherer,Tieliu Shi,Weiwei Shi,Jaeyun Sung,Danielle Thierry-Mieg,Jean Thierry-Mieg,Venkata Thodima,Johan Trygg,Lakshmi Vishnuvajjala,Sue Jane Wang,Jianping Wu,Yichao Wu,Qian Xie,Waleed A. Yousef,Liang Zhang,Xuegong Zhang,Sheng Zhong,Yiming Zhou,Sheng Zhu,Dhivya Arasappan,Wenjun Bao,Anne Bergstrom Lucas,Frank Berthold,Richard J. Brennan,Andreas Buness,Jennifer G. Catalano,Chang Chang,Rong Chen,Yiyu Cheng,Jian Cui,Wendy Czika,Francesca Demichelis,Xutao Deng,Damir Dosymbekov,Roland Eils,Yang Feng,Jennifer Fostel,Stephanie Fulmer-Smentek,James C. Fuscoe,Laurent Gatto,Weigong Ge,Darlene R. Goldstein,Li Guo,Donald N. Halbert,Jing Han,Stephen C. Harris,Christos Hatzis,Damir Herman,Jianping Huang,Roderick V. Jensen,Rui Jiang,Charles D. Johnson,Giuseppe Jurman,Yvonne Kahlert,Sadik A. Khuder,Matthias Kohl,Jianying Li,Li Lee,Menglong Li,Quan Zhen Li,Shao Li,Zhiguang Li,Jie Liu,Ying Liu,Zhichao Liu,Lu Meng,Manuel Madera,Francisco Martinez-Murillo,Ignacio Medina,Joseph Meehan,K. Miclaus,Richard A. Moffitt,David Montaner,Piali Mukherjee,George Mulligan,Padraic Neville,Tatiana Nikolskaya,Baitang Ning,Grier P. Page,Joel S. Parker,R. Mitchell Parry,Xuejun Peng,Ron L. Peterson,John H. Phan,Brian Quanz,Yi Ren,Samantha Riccadonna,Alan H. Roter,Frank W. Samuelson,Martin Schumacher,Joseph D. Shambaugh,Qiang Shi,Richard Shippy,Shengzhu Si,Aaron Smalter,Christos Sotiriou,Mat Soukup,Frank Staedtler,Guido Steiner,Todd H. Stokes,Qinglan Sun,Pei Yi Tan,Rong Tang,Zivana Tezak,Brett T. Thorn,Marina Tsyganova,Yaron Turpaz,S. Vega,Roberto Visintainer,Juergen Von Frese,Charles Wang,Eric Wang,Junwei Wang,Wei Wang,Frank Westermann,James C. Willey,Matthew Woods,Shujian Wu,Nianqing Xiao,Joshua Xu,Lei Xu,Lun Yang,Xiao Zeng,Jialu Zhang,Li Zheng,Min Zhang,Chen Zhao,Raj K. Puri,Uwe Scherf,Weida Tong,Russell D. Wolfinger +201 more
TL;DR: P predictive models for classifying a sample with respect to one of 13 endpoints indicative of lung or liver toxicity in rodents, or of breast cancer, multiple myeloma or neuroblastoma in humans are generated.
Journal ArticleDOI
Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease
Rebecca Sims,Sven J. van der Lee,Adam C. Naj,Céline Bellenguez,Céline Bellenguez,Nandini Badarinarayan,Johanna Jakobsdottir,Brian W. Kunkle,Anne Boland,Rachel Raybould,Joshua C. Bis,Eden R. Martin,Benjamin Grenier-Boley,Benjamin Grenier-Boley,Stefanie Heilmann-Heimbach,Vincent Chouraki,Vincent Chouraki,Amanda B. Kuzma,Kristel Sleegers,Kristel Sleegers,Maria Vronskaya,Agustín Ruiz,Robert R. Graham,Robert Olaso,Per Hoffmann,Per Hoffmann,Megan L. Grove,Badri N. Vardarajan,Mikko Hiltunen,Markus M. Nöthen,Charles C. White,Kara L. Hamilton-Nelson,Jacques Epelbaum,Wolfgang Maier,Wolfgang Maier,Seung Hoan Choi,Gary W. Beecham,Cécile Dulary,Stefan Herms,Stefan Herms,Albert V. Smith,Cory C. Funk,Céline Derbois,Andreas J. Forstner,Shahzad Ahmad,Hong-Dong Li,Delphine Bacq,Denise Harold,Claudia L. Satizabal,Claudia L. Satizabal,Otto Valladares,Alessio Squassina,Rhodri Thomas,Jennifer A. Brody,Liming Qu,Pascual Sánchez-Juan,Taniesha Morgan,Frank J. Wolters,Yi Zhao,Florentino Sanchez Garcia,Nicola Denning,Myriam Fornage,John Malamon,Maria Candida Deniz Naranjo,Elisa Majounie,Thomas H. Mosley,Beth A. Dombroski,David Wallon,Michelle K. Lupton,Michelle K. Lupton,Josée Dupuis,Patrice L. Whitehead,Laura Fratiglioni,Laura Fratiglioni,Christopher Medway,Xueqiu Jian,Shubhabrata Mukherjee,Lina Keller,Kristelle Brown,Honghuang Lin,Laura B. Cantwell,Francesco Panza,Bernadette McGuinness,Sonia Moreno-Grau,Jeremy D. Burgess,Vincenzo Solfrizzi,Petra Proitsi,Hieab H.H. Adams,Mariet Allen,Davide Seripa,Pau Pastor,L. Adrienne Cupples,L. Adrienne Cupples,Nathan D. Price,Didier Hannequin,Ana Frank-García,Ana Frank-García,Daniel Levy,Daniel Levy,Paramita Chakrabarty,Paolo Caffarra,Paolo Caffarra,Ina Giegling,Alexa S. Beiser,Alexa S. Beiser,Vilmantas Giedraitis,Harald Hampel,Harald Hampel,Melissa E. Garcia,Xue Wang,Lars Lannfelt,Patrizia Mecocci,Gudny Eiriksdottir,Paul K. Crane,Florence Pasquier,Florence Pasquier,Virginia Boccardi,Isabel Henández,Robert Barber,Martin Scherer,Lluís Tárraga,Perrie M. Adams,Markus Leber,Yuning Chen,Marilyn S. Albert,Steffi G. Riedel-Heller,Valur Emilsson,Duane Beekly,Anne Braae,Reinhold Schmidt,Deborah Blacker,Carlo Masullo,Helena Schmidt,Rachelle S. Doody,Gianfranco Spalletta,W. T. Longstreth,Thomas Fairchild,Paola Bossù,Oscar L. Lopez,Matthew P. Frosch,Eleonora Sacchinelli,Bernardino Ghetti,Qiong Yang,Ryan M. Huebinger,Frank Jessen,Frank Jessen,Frank Jessen,Shuo Li,M. Ilyas Kamboh,John C. Morris,Oscar Sotolongo-Grau,Mindy J. Katz,Chris Corcoran,Melanie L. Dunstan,Amy Braddel,Charlene Thomas,Alun Meggy,Rachel Marshall,Amy Gerrish,Jade Chapman,Miquel Aguilar,Sarah Taylor,Matt Hill,Monica Diez Fairen,Angela Hodges,Bruno Vellas,Hilkka Soininen,Iwona Kłoszewska,Makrina Daniilidou,James Uphill,Yogen Patel,Joseph T. Hughes,Jenny Lord,James Turton,Annette M. Hartmann,Roberta Cecchetti,Chiara Fenoglio,Maria Serpente,Marina Arcaro,Carlo Caltagirone,Maria Donata Orfei,Antonio Ciaramella,Sabrina Pichler,Manuel Mayhaus,Wei Gu,Alberto Lleó,Juan Fortea,Rafael Blesa,Imelda Barber,Keeley J. Brookes,Chiara Cupidi,Raffaele Maletta,David Carrell,Sandro Sorbi,Susanne Moebus,Maria Urbano,Alberto Pilotto,Johannes Kornhuber,Paolo Bosco,Stephen Todd,David Craig,Janet A. Johnston,Michael Gill,Brian A. Lawlor,Aoibhinn Lynch,Nick C. Fox,John Hardy,Roger L. Albin,Liana G. Apostolova,Liana G. Apostolova,Liana G. Apostolova,Steven E. Arnold,Sanjay Asthana,Craig S. Atwood,Clinton T. Baldwin,Lisa L. Barnes,Sandra Barral,Thomas G. Beach,James T. Becker,Eileen H. Bigio,Thomas D. Bird,Bradley F. Boeve,James Bowen,Adam L. Boxer,James R. Burke,Jeffrey M. Burns,Joseph D. Buxbaum,Nigel J. Cairns,Chuanhai Cao,Christopher S. Carlson,Cynthia M. Carlsson,Regina M. Carney,Minerva M. Carrasquillo,Steven L. Carroll,Carolina Ceballos Diaz,Helena C. Chui,David G. Clark,David G. Clark,David H. Cribbs,Elizabeth Crocco,Charles DeCarli,Malcolm B. Dick,Ranjan Duara,Denis A. Evans,Kelley Faber,Kenneth B. Fallon,David W. Fardo,Martin R. Farlow,Steven H. Ferris,Tatiana Foroud,Douglas Galasko,Marla Gearing,Daniel H. Geschwind,John R. Gilbert,Neill R. Graff-Radford,Robert C. Green,John H. Growdon,Ronald L. Hamilton,Lindy E. Harrell,Lawrence S. Honig,Matthew J. Huentelman,Christine M. Hulette,Bradley T. Hyman,Gail P. Jarvik,Erin L. Abner,Lee-Way Jin,Gyungah Jun,Anna Karydas,Jeffrey Kaye,Jeffrey Kaye,Ronald C. Kim,Neil W. Kowall,Joel H. Kramer,Frank M. LaFerla,James J. Lah,James B. Leverenz,Allan I. Levey,Ge Li,Andrew P. Lieberman,Kathryn L. Lunetta,Constantine G. Lyketsos,Daniel C. Marson,Frank Martiniuk,Deborah C. Mash,Eliezer Masliah,Wayne C. McCormick,Susan M. McCurry,Andrew McDavid,Ann C. McKee,M.-Marsel Mesulam,Bruce L. Miller,Carol A. Miller,Joshua W. Miller,Jill R. Murrell,Amanda J. Myers,Sid E. O'Bryant,John M Olichney,Vernon S. Pankratz,Joseph E. Parisi,Henry L. Paulson,William Perry,Elaine R. Peskind,Aimee Pierce,Wayne W. Poon,Huntington Potter,Joseph F. Quinn,Joseph F. Quinn,Ashok Raj,Murray A. Raskind,Barry Reisberg,Christiane Reitz,John M. Ringman,Erik D. Roberson,Ekaterina Rogaeva,Howard J. Rosen,Roger N. Rosenberg,Mark A. Sager,Andrew J. Saykin,Julie A. Schneider,Lon S. Schneider,William W. Seeley,Amanda Smith,Joshua A. Sonnen,Salvatore Spina,Robert S. Stern,Russell H. Swerdlow,Rudolph E. Tanzi,Tricia A. Thornton-Wells,John Q. Trojanowski,Juan C. Troncoso,Vivianna M. Van Deerlin,Linda J. Van Eldik,Harry V. Vinters,Jean Paul G. Vonsattel,Sandra Weintraub,Kathleen A. Welsh-Bohmer,Kirk C. Wilhelmsen,Jennifer Williamson,Thomas S. Wingo,Randall L. Woltjer,Clinton B. Wright,Chang En Yu,Lei Yu,Fabienne Garzia,Feroze Golamaully,Gislain Septier,Sebastien Engelborghs,Rik Vandenberghe,Peter Paul De Deyn,Carmen Muñoz Fernadez,Yoland Aladro Benito,Håkan Thonberg,Charlotte Forsell,Lena Lilius,Anne Kinhult-Ståhlbom,Lena Kilander,RoseMarie Brundin,Letizia Concari,Letizia Concari,Seppo Helisalmi,Anne M. Koivisto,Annakaisa Haapasalo,Vincent Dermecourt,Nathalie Fievet,Olivier Hanon,Carole Dufouil,Carole Dufouil,Alexis Brice,Alexis Brice,Karen Ritchie,Bruno Dubois,Bruno Dubois,Jayanadra J. Himali,C. Dirk Keene,JoAnn T. Tschanz,Annette L. Fitzpatrick,Walter A. Kukull,Maria C. Norton,Thor Aspelund,Eric B. Larson,Eric B. Larson,Ronald G. Munger,Jerome I. Rotter,Richard B. Lipton,María J. Bullido,María J. Bullido,Albert Hofman,Thomas J. Montine,Eliecer Coto,Eric Boerwinkle,Eric Boerwinkle,Ronald C. Petersen,Victoria Alvarez,Fernando Rivadeneira,Eric M. Reiman,Maura Gallo,Christopher J. O'Donnell,Joan S. Reisch,Amalia C. Bruni,Donald R. Royall,Martin Dichgans,Martin Dichgans,Mary Sano,Daniela Galimberti,Peter St George-Hyslop,Peter St George-Hyslop,Elio Scarpini,Debby W. Tsuang,Michelangelo Mancuso,Ubaldo Bonuccelli,Ashley R. Winslow,Antonio Daniele,Chuang Kuo Wu,Oliver Peters,Benedetta Nacmias,Matthias Riemenschneider,Reinhard Heun,Carol Brayne,David C. Rubinsztein,Jose Bras,Jose Bras,Rita Guerreiro,Rita Guerreiro,Ammar Al-Chalabi,Christopher Shaw,John Collinge,David G. Mann,David G. Mann,Jordi Clarimón,Rebecca Sussams,Simon Lovestone,Michael Conlon O'Donovan,Michael John Owen,Timothy W. Behrens,Simon Mead,André G. Uitterlinden,André G. Uitterlinden,Carlos Cruchaga,Martin Ingelsson,David A. Bennett,John Powell,Todd E. Golde,Caroline Graff,Philip L. De Jager,Kevin Morgan,Nilufer Ertekin-Taner,Onofre Combarros,Bruce M. Psaty,Peter Passmore,Steven G. Younkin,Claudine Berr,Vilmundur Gudnason,Dan Rujescu,Dennis W. Dickson,Jean-François Dartigues,Anita L. DeStefano,Anita L. DeStefano,Sara Ortega-Cubero,Hakon Hakonarson,Dominique Campion,Mercè Boada,John K Kauwe,Lindsay A. Farrer,Christine Van Broeckhoven,Christine Van Broeckhoven,M. Arfan Ikram,Lesley Jones,Jonathan L. Haines,Christophe Tzourio,Lenore J. Launer,Lenore J. Launer,Valentina Escott-Price,Richard Mayeux,Jean-François Deleuze,Najaf Amin,Alison Goate,Margaret A. Pericak-Vance,Peter Holmans,Cornelia M. van Duijn,Alfredo Ramirez,Alfredo Ramirez,Li-San Wang,Jean-Charles Lambert,Jean-Charles Lambert,Sudha Seshadri,Sudha Seshadri,Julie Williams,Gerard D. Schellenberg +487 more
TL;DR: Three new genome-wide significant nonsynonymous variants associated with Alzheimer's disease are observed, providing additional evidence that the microglia-mediated innate immune response contributes directly to the development of Alzheimer's Disease.
Journal ArticleDOI
Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus.
Benjamin Readhead,Jean-Vianney Haure-Mirande,Cory C. Funk,Matthew A. Richards,Paul Shannon,Vahram Haroutunian,Vahram Haroutunian,Mary Sano,Mary Sano,Winnie S. Liang,Noam D. Beckmann,Nathan D. Price,Eric M. Reiman,Eric E. Schadt,Michelle E. Ehrlich,Sam Gandy,Joel T. Dudley +16 more
TL;DR: This study constructs multiscale networks of the late-onset AD-associated virome, and elucidates networks linking molecular, clinical, and neuropathological features with viral activity and indicates viral activity constituting a general feature of AD.