Showing papers by "Point Blue Conservation Science published in 2017"

Dynamic conservation for migratory species.

Abstract: In an era of unprecedented and rapid global change, dynamic conservation strategies that tailor the delivery of habitat to when and where it is most needed can be critical for the persistence of species, especially those with diverse and dispersed habitat requirements. We demonstrate the effectiveness of such a strategy for migratory waterbirds. We analyzed citizen science and satellite data to develop predictive models of bird populations and the availability of wetlands, which we used to determine temporal and spatial gaps in habitat during a vital stage of the annual migration. We then filled those gaps using a reverse auction marketplace to incent qualifying landowners to create temporary wetlands on their properties. This approach is a cost-effective way of adaptively meeting habitat needs for migratory species, optimizes conservation outcomes relative to investment, and can be applied broadly to other conservation challenges.

High mortality of blue, humpback and fin whales from modeling of vessel collisions on the U.S. West Coast suggests population impacts and insufficient protection

Abstract: Mortality from collisions with vessels is one of the main human causes of death for large whales. Ship strikes are rarely witnessed and the distribution of strike risk and estimates of mortality remain uncertain at best. We estimated ship strike mortality for blue humpback and fin whales in U.S. West Coast waters using a novel application of a naval encounter model. Mortality estimates from the model were far higher than current minimum estimates derived from stranding records and are closer to extrapolations adjusted for detection probabilities of dead whales. Our most conservative model estimated mortality to be 7.8x, 2.0x and 2.7x the U.S. recommended limit for blue, humpback and fin whales, respectively, suggesting that death from vessel collisions may be a significant impediment to population growth and recovery. Comparing across the study area, the majority of strike mortality occurs in waters off California, from Bodega Bay south and tends to be concentrated in a band approximately 24 Nm (44.5 km) offshore and in designated shipping lanes leading to and from major ports. While some mortality risk exists across nearly all West Coast waters, 74%, 82% and 65% of blue, humpback and fin whale mortality, respectively, occurs in just 10% of the study area, suggesting conservation efforts can be very effective if focused in these waters. Risk is highest in the shipping lanes off San Francisco and Long Beach, but only a fraction of total estimated mortality occurs in these proportionally small areas, making any conservation efforts exclusively within these areas insufficient to address overall strike mortality. We recommend combining shipping lane modifications and re-locations, ship speed reductions and creation of 'Areas to be Avoided' by vessels in ecologically important locations to address this significant source of whale mortality.

Diverse and Highly Recombinant Anelloviruses Associated with Weddell Seals in Antarctica

Abstract: The viruses circulating among Antarctic wildlife remain largely unknown. In an effort to identify viruses associated with Weddell seals (Leptonychotes weddellii) inhabiting the Ross Sea, vaginal and nasal swabs, and faecal samples were collected between November 2014 and February 2015. In addition, a Weddell seal kidney and South Polar skua (Stercorarius maccormicki) faeces were opportunistically sampled. Using high throughput sequencing, we identified and recovered 152 anellovirus genomes that share 63-70% genome-wide identities with other pinniped anelloviruses. Genome-wide pairwise comparisons coupled with phylogenetic analysis revealed two novel anellovirus species, tentatively named torque teno Leptonychotes weddellii virus (TTLwV) -1 and -2. TTLwV-1 (n = 133, genomes encompassing 40 genotypes) is highly recombinant, whereas TTLwV-2 (n = 19, genomes encompassing three genotypes) is relatively less recombinant. This study documents ubiquitous TTLwVs among Weddell seals in Antarctica with frequent co-infection by multiple genotypes, however, the role these anelloviruses play in seal health remains unknown.

Parental cooperation in a changing climate: fluctuating environments predict shifts in care division

Abstract: Aim: Parental care improves the survival of offspring and therefore has a major impact on reproductive success. It is increasingly recognized that coordinated biparental care is necessary to ensure the survival of offspring in hostile environments, but little is known about the influence of environmental fluctuations on parental cooperation. Assessing the impacts of environmental stochasticity, however, is essential for understanding how populations will respond to climate change and the associated increasing frequencies of extreme weather events. Here we investigate the influence of environmental stochasticity on biparental incubation in a cosmopolitan ground-nesting avian genus. Location: Global. Methods: We assembled data on biparental care in 36 plover populations (Charadrius spp.) from six continents, collected between 1981 and 2012. Using a space-for-time approach we investigate how average temperature, temperature stochasticity (i.e. year-to-year variation) and seasonal temperature variation during the breeding season influence parental cooperation during incubation. Results: We show that both average ambient temperature and its fluctuations influence parental cooperation during incubation. Male care relative to female care increases with both mean ambient temperature and temperature stochasticity. Local climatic conditions explain within-species population differences in parental cooperation, probably reflecting phenotypic plasticity of behaviour. Main conclusions: The degree of flexibility in parental cooperation is likely to mediate the impacts of climate change on the demography and reproductive behaviour of wild animal populations.

Unique genome organization of non-mammalian papillomaviruses provides insights into the evolution of viral early proteins.

Abstract: US National Science Foundation (NSF) [ANT-0944411]; State of Arizona Improving Health TRIF; National Institute of Food and Agriculture, U.S. Department of Agriculture, Hatch NC229; Center of Evolution and Medicine Venture Fund (Center of Evolution and Medicine, Arizona State University, USA) grant

Population-level plasticity in foraging behavior of western gulls ( Larus occidentalis )

Abstract: Plasticity in foraging behavior among individuals, or across populations may reduce competition. As a generalist carnivore, western gulls (Larus occidentalis) consume a wide range of marine and terrestrial foods. However, the foraging patterns and habitat selection (ocean or land) of western gulls is not well understood, despite their ubiquity in coastal California. Here, we used GPS loggers to compare the foraging behavior and habitat use of western gulls breeding at two island colonies in central California. Gulls from offshore Southeast Farallon Island (SFI; n = 41 gulls) conducted more oceanic trips (n = 90) of shorter duration (3.8 ± 3.3 SD hours) and distance (27.1 ± 20.3 km) than trips to the mainland (n = 41) which were nearly 4 times longer and 2 times farther away. In contrast, gulls from coastal Ano Nuevo Island (ANI; n = 20 gulls) foraged at sites on land more frequently (n = 103) but trip durations (3.6 ± 2.4 h) and distances (20.8 ± 9.4 km) did not differ significantly from oceanic trips (n = 42) where trip durations were only slightly shorter (2.9 ± 2.7 h) and equidistant (20.6 ± 12.1 km). Gulls from both colonies visited more sites while foraging at sea but spent significantly longer (3–5 times) durations at each site visited on land. Foraging at sea was also more random compared to foraging trips over land where gulls from both colonies visited the same sites on multiple trips. The total home range of gulls from SFI (14,230 km2) was 4.5 times larger than that of gulls from ANI, consistent with greater resource competition resulting from a larger abundance of seabirds at SFI. Population-level plasticity in foraging behavior was evident and dependent on habitat type. In addition, gulls from SFI were away foraging longer than gulls from ANI (22% vs. 7.5%, respectively), which impacts the defense of territories and attempts at nest predation by conspecifics. Our results can be used to explain lower chick productivity at SFI, and can provide insight into increased gull activity in urban areas.

Circumpolar analysis of the Adélie Penguin reveals the importance of environmental variability in phenological mismatch.

Abstract: Evidence of climate change-driven shifts in plant and animal phenology have raised concerns that certain trophic interactions may be increasingly mismatched in time, resulting in declines in reproductive success. Given the constraints imposed by extreme seasonality at high latitudes and the rapid shifts in phenology seen in the Arctic, we would also expect Antarctic species to be highly vulnerable to climate change-driven phenological mismatches with their environment. However, few studies have assessed the impacts of phenological change in Antarctica. Using the largest database of phytoplankton phenology, sea-ice phenology, and Adelie penguin breeding phenology and breeding success assembled to date, we find that while a temporal match between penguin breeding phenology and optimal environmental conditions sets an upper limit on breeding success, only a weak relationship to the mean exists. Despite previous work suggesting that divergent trends in Adelie penguin breeding phenology are apparent across the Antarctic continent, we find no such trends. Furthermore, we find no trend in the magnitude of phenological mismatch, suggesting that mismatch is driven by interannual variability in environmental conditions rather than climate change-driven trends, as observed in other systems. We propose several criteria necessary for a species to experience a strong climate change-driven phenological mismatch, of which several may be violated by this system. This article is protected by copyright. All rights reserved.

Invasive plants decrease microbial capacity to nitrify and denitrify compared to native California grassland communities

Abstract: Exotic plant invasions are a major driver of global environmental change that can significantly alter the availability of limiting nutrients such as nitrogen (N). Beginning with European colonization of California, native grasslands were replaced almost entirely by annual exotic grasses, many of which are now so ubiquitous that they are considered part of the regional flora (“naturalized”). A new wave of invasive plants, such as Aegilops triuncialis (Barb goatgrass) and Elymus caput-medusae (Medusahead), continue to spread throughout the state today. To determine whether these new-wave invasive plants alter soil N dynamics, we measured inorganic N pools, nitrification and denitrification potentials, and possible mediating factors such as microbial biomass and soil pH in experimental grasslands comprised of A. triuncialis and E. caput-medusae. We compared these measurements with those from experimental grasslands containing: (1) native annuals and perennials and (2) naturalized exotic annuals. We found that A. triuncialis and E. caput-medusae significantly reduced ion-exchange resin estimates of nitrate (NO3 −) availability as well as nitrification and denitrification potentials compared to native communities. Active microbial biomass was also lower in invaded soils. In contrast, potential measurements of nitrification and denitrification were similar between invaded and naturalized communities. These results suggest that invasion by A. triuncialis and E. caput-medusae may significantly alter the capacity for soil microbial communities to nitrify or denitrify, and by extension alter soil N availability and rates of N transformations during invasion of remnant native-dominated sites.

Coping with the loss of large, energy-dense prey: a potential bottleneck for Weddell Seals in the Ross Sea.

Abstract: Extraction of Antarctic toothfish (Dissostichus mawsoni) in the Ross Sea began in 1997, following a management plan that targets the largest fish with a goal of reducing the spawning biomass by 50% over 35 yr. We investigate the potential long-term consequences of the reduced availability of this prey for Weddell seals (Leptonychotes weddellii). Energy demands in seals are acute, especially immediately following lactation, when females must recover substantial mass and cope with molting costs. We tested the hypothesis that toothfish are critically important for adult female seals during this period. Toothfish body mass is three orders of magnitude greater, and its energy density nearly double that of the most common seal prey, Antarctic silverfish (Pleuragramma antarcticum). Reduction or elimination of toothfish consumption could impair a female's ability to sufficiently recover and successfully produce a pup in the following pupping season. Our goals are to (1) illustrate mechanisms and conditions whereby toothfish depletion might plausibly affect seal population trends; (2) identify measurable parameters of the seals' ecology that may help better understand the potential negative impact of toothfish depletion on seal populations; and (3) promote a precautionary management approach for the fishery that includes monitoring of seal populations We constructed a set of inter-linked models of seal diving behavior, physiological condition, and demography based on existing information. We evaluate the effect of the following factors on seal mass recovery and intrinsic population growth rates: fishery depletion rate, daily diving limits, probability of a successful dive, and body mass recovery target. We show that loss of toothfish has the greatest potential impact on seal populations' growth rate. Under some scenarios, populations may decrease at >10% per year. Critical parameters to better understand fishery impacts include prevalence and size of toothfish in the seals' diet; the relationship between diet and the rate of mass recovery; and female breeding propensity in relation to body condition at the end of the molting period. Our results lend support to concerns about the potential negative impact of toothfish extraction in the Ross Sea; and to advocate for a precautionary management approach by the fishery.

Spatio-temporal occurrence patterns of cetaceans near Ross Island, Antarctica, 2002–2015: implications for food web dynamics

Abstract: The Ross Sea pelagic food web is closely coupled, with the foraging among abundant upper level species affecting the foraging of one another. To investigate the roles cetaceans may have in such interspecific interactions in this system, we studied within-season and interannual occurrence patterns of Antarctic minke whales (Balaenoptera bonaerensis) and type-B and type-C killer whales (Orcinus orca) within the southwestern Ross Sea, 2002–2015. Time series analysis summarized daily observations made from 3 shore localities: Capes Crozier, Bird, and Royds distributed around the ~120 km periphery of Ross Island. In early mid-November, both species arrived at Crozier, the easternmost point and westward edge of the Ross Sea Polynya marginal ice zone. Subsequently, coinciding with decreased sea ice cover and numbers off Crozier, both species appeared off Bird, then Royds, 80 and 117 km to the west/southwest, respectively. Arrival in either area coincided with SIC decreasing to <80%, consistent with observations elsewhere. Within-season off Crozier, both species occurred in cycles of multi-day presence followed by absence, perhaps reflecting the spatio-temporal patchiness of prey indicated also by penguin foraging patterns. Within-season off Royds, especially for killer whales, occurrence was even more episodic; type-Bs arrived before type-Cs, and results support previously described resident and transient portions of the type-C population. Combined with results showing that whale arrival leads to food stress among penguins, we suggest that relatively few cetaceans can alter food availability to alter the foraging behavior of other mesopredators, despite primary productivity being the richest in the Southern Ocean.

Using regional bird density distribution models to evaluate protected area networks and inform conservation planning

Abstract: As data about populations of indicator species become available, proactive strategies that improve representation of biological diversity within protected area networks should consider finer-scaled evaluations, especially in regions identified as important through course-scale analyses. We use density distribution models derived from a robust regional bird abundance dataset, coupled with habitat conservation plans, to evaluate a network of protected areas and to inform conservation and biodiversity planning in the greater Klamath Siskiyou Bioregion, an area recognized globally as a region of outstanding biological diversity. Our novel modeling approach allowed for comparisons of abundance of conservation focal species on federal vs. non-federal lands, federal lands that are protected to maintain natural habitats vs. federal lands managed for multiple uses, and seven protected areas of interest. Our comparisons highlight conservation opportunities for suites of species associated with coniferous forests, oak woodlands, and grasslands. Specifically, we found that species associated with oak woodland and grassland habitats, both habitats of conservation concern, were not well represented in the Bioregion's existing protected areas. These species would benefit from expanding the regional protected area network to include their associated at-risk habitats. In contrast, our results suggest that coniferous forests birds are well represented in the Bioregion's protected areas. We identify management opportunities specifically associated with the restoration of fire-adapted ecosystems that would benefit coniferous forest focal species on both federally protected areas and other multiple-use lands. Our analysis provides an example of how a finer-scaled evaluation of a regional protected area network adds value to course-scale evaluations of protected areas and biological diversity. Data and results from this research were used to inform science-based expansion of the Bioregion's network of protected areas.

Modeling Nonresident Seabird Foraging Distributions to Inform Ocean Zoning in Central California.

Abstract: Seabird aggregations at sea have been shown to be associated with concentrations of prey. Previous research identified Central California as a highly used foraging area for seabirds, with locally breeding seabirds foraging close to their colonies on Southeast Farallon Island. Herein, we focus on nonresident (i.e. non-locally breeding) seabird species off of Central California. We hypothesized that high-use foraging areas for nonresident seabirds would be influenced by oceanographic and bathymetric factors and that spatial and temporal distributions would be similar within planktivorous and generalist foraging guilds but would differ between them. With data collected by the Applied California Current Ecosystem Studies (ACCESS) partnership during cruises between April and October from 2004-2013, we developed generalized linear models to identify high-use foraging areas for each of six nonresident seabird species. The four generalist species are Phoebastria nigripes (black-footed albatross), Ardenna griseus (sooty shearwater), Ardenna creatopus (pink-footed shearwater), and Fulmarus glacialis (northern fulmar). The two planktivorous species are Phalaropus lobatus (red-necked phalarope) and Phalaropus fulicarius (red phalarope). Sea surface temperature was significant for generalist species and sea surface salinity was important for planktivorous species. The distance to the 200-m isobath was significant in five of six models, Pacific Decadal Oscillation with a 3-month lag in four models, and sea surface fluorescence, the distance to Cordell Bank, and depth in three models. We did not find statistically significant differences between distributions of individual seabird species within a foraging guild or between guilds, with the exception of the sooty shearwater. Model results for a multi-use seabird foraging area highlighted the continental shelf break, particularly within the vicinity of Cordell Bank, as the highest use areas as did Marxan prioritization. Our research methods can be implemented elsewhere to identify critical habitat that needs protection as human development pressures continue to expand to the ocean.

Advancing ecological restoration through experimental design on spatial and temporal scales relevant to wildlife

Abstract: Experimenting with new and unconventional restoration methods and designs is critical to advancing the field of ecological restoration. Conventional methods cannot be considered reliable in a future with climate change-induced shifts in weather conditions, species distributions, and ecosystem processes. It is crucial that researchers and practitioners collaborate to identify the most effective restoration methods, yet there remains a disturbing lack of restoration experiments at the spatial or temporal scales relevant for evaluating wildlife responses. We suspect that willingness to attempt such experiments is hampered by the perceived difficulty of conducting these experiments combined with a fear of failure. However, we argue that failure to experiment with new methods guarantees learning nothing new. Here, we address many of the major challenges of designing an experiment to evaluate wildlife responses to restoration, including (1) distinguishing between the goals and objectives of the restoration project and the key uncertainties the experiment will address, (2) designing the experiment itself, including optimizing plot size and replication, and (3) determining how and when the results will be evaluated. We then illustrate how we designed an experiment to evaluate riparian bird responses to restoration along the lower Cosumnes River in the Central Valley of California, USA. Researchers and practitioners working together from the start of the objectives-setting process, through experimental design, implementation, and evaluation can proactively address the challenges of conducting a restoration experiment and maximize the chances of successfully identifying effective restoration methods, adding to the practitioners’ toolbox, and accelerating the rate of successful habitat restoration.