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A tripeptidyl peptidase 1 is a binding partner of the Golgi pH regulator (GPHR) in Dictyostelium

TLDR
Interaction of Dictyostelium tripeptidyl peptidase 1 with GPHR could be relevant for studies of the human enzyme, which is associated with a neurodegenerative disorder.
Abstract
Mutations in tripeptidyl peptidase 1 (TPP1) have been associated with late infantile neuronal ceroid lipofuscinosis (NCL2), a neurodegenerative disorder TPP1 is a lysosomal serine protease, which removes tripeptides from the amino terminus of proteins and is composed of an N-terminal prodomain and a catalytic domain It is conserved in mammals, amphibians, fish and the amoeba Dictyostelium discoideum D discoideum harbors at least six genes encoding tripeptidyl peptidase 1, tpp1A to tpp1F We identified TPP1F as binding partner of Dictyostelium GPHR (Golgi pH regulator), which is an evolutionary highly conserved intracellular transmembrane protein For the interaction, a region encompassing the DUF3735 (GPHR_N) domain of GPHR was responsible In TPP1F the binding site was located in the prodomain The Tpp1F gene is transcribed throughout development and translated into a polypeptide of approximately 65 kDa TPP1 activity was demonstrated for TPP1F-GFP immunoprecipitated from D discoideum cells Its activity could be inhibited by addition of the recombinant DUF3735 domain of GPHR Knockout tpp1F mutants did not display a particular phenotype and TPP1 activity was not abrogated, which is presumably due to expression of Tpp1B showing the highest expression levels of all Tpp1 genes during growth The GPHR interaction was not restricted to TPP1F but occurred also with TPP1B Based on previous reports showing that the majority of the TPP1 mutations in NCL2 resulted in reduction or loss of enzyme activity, our findings may help to create new reagents with which one can affect the activity of the protein and ameliorate the disease

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Cln5 is secreted and functions as a glycoside hydrolase in Dictyostelium.

TL;DR: Dictyostelium Cln5 contains a putative signal peptide for secretion and it is revealed that the protein is secreted during growth and starvation, providing the first evidence in any system linking a molecular function to CLN5.
Journal ArticleDOI

Mutation update: Review of TPP1 gene variants associated with neuronal ceroid lipofuscinosis CLN2 disease.

TL;DR: The spectrum of TPP1 variants associated with CLN2 disease is updated, comprising 131 unique variants from 389 individuals (717 alleles) collected from the literature review, public databases, and laboratory communications.
Journal ArticleDOI

Changing Times for CLN2 Disease: The Era of Enzyme Replacement Therapy.

TL;DR: Administration of cerliponase alfa in patients with CLN2 disease has led to significant reductions in the rate of decline of motor and language functions in comparison with a natural history population, highlighting the need to understand different patterns of disease progression and clinical needs in treated patients.
Journal ArticleDOI

The past, present and future of Dictyostelium as a model system.

TL;DR: The finding that the Dictyostelium genome harbours several homologs of human genes responsible for a variety of diseases has stimulated their analysis, providing new insights into the mechanism of action of the encoded proteins and in some cases into the defect underlying the disease.
Journal ArticleDOI

Recent Insights into NCL Protein Function Using the Model Organism Dictyostelium discoideum.

TL;DR: This review highlights recent advances in NCL research using Dictyostelium as a biomedical model, and examines the effects of NCL gene deficiency on conserved cellular and developmental processes.
References
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Journal ArticleDOI

Mapping and quantifying mammalian transcriptomes by RNA-Seq.

TL;DR: Although >90% of uniquely mapped reads fell within known exons, the remaining data suggest new and revised gene models, including changed or additional promoters, exons and 3′ untranscribed regions, as well as new candidate microRNA precursors.
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The Phyre2 web portal for protein modeling, prediction and analysis

TL;DR: An updated protocol for Phyre2, which uses advanced remote homology detection methods to build 3D models, predict ligand binding sites and analyze the effect of amino acid variants for a user's protein sequence.
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Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

TL;DR: Current understanding of the major factors regulating protein expression is summarized to demonstrate a substantial role for regulatory processes occurring after mRNA is made in controlling steady-state protein abundances.
Journal ArticleDOI

CDD: NCBI's conserved domain database

TL;DR: NCBI's CDD, the Conserved Domain Database, enters its 15th year as a public resource for the annotation of proteins with the location of conserved domain footprints and aims at increasing coverage and providing finer-grained classifications of common protein domains.
Journal ArticleDOI

The genome of the social amoeba Dictyostelium discoideum

Ludwig Eichinger, +98 more
- 05 May 2005 - 
TL;DR: A proteome-based phylogeny shows that the amoebozoa diverged from the animal–fungal lineage after the plant–animal split, but Dictyostelium seems to have retained more of the diversity of the ancestral genome than have plants, animals or fungi.
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