AFNI: software for analysis and visualization of functional magnetic resonance neuroimages
TLDR
A package of computer programs for analysis and visualization of three-dimensional human brain functional magnetic resonance imaging (FMRI) results is described and techniques for automatically generating transformed functional data sets from manually labeled anatomical data sets are described.About:
This article is published in Computers and Biomedical Research.The article was published on 1996-06-01 and is currently open access. It has received 10002 citations till now. The article focuses on the topics: Visualization.read more
Citations
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Journal ArticleDOI
Co-Planar Stereotaxic Atlas of the Human Brain—3-Dimensional Proportional System: An Approach to Cerebral Imaging, J. Talairach, P. Tournoux. Georg Thieme Verlag, New York (1988), 122 pp., 130 figs. DM 268
Journal ArticleDOI
A component based noise correction method (CompCor) for BOLD and perfusion based fMRI
TL;DR: A component based method for the reduction of noise in both blood oxygenation level-dependent (BOLD) and perfusion-based functional magnetic resonance imaging (fMRI) data is presented and the temporal standard deviation of resting-state perfusion and BOLD data in gray matter regions was significantly reduced.
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Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates
TL;DR: It is found that the most common software packages for fMRI analysis (SPM, FSL, AFNI) can result in false-positive rates of up to 70%.
Journal ArticleDOI
Toward discovery science of human brain function
Bharat B. Biswal,Maarten Mennes,Xi-Nian Zuo,Suril Gohel,Clare Kelly,Steve M. Smith,Christian F. Beckmann,Jonathan S. Adelstein,Randy L. Buckner,Stan Colcombe,Anne Marie Dogonowski,Monique Ernst,Damien A. Fair,Michelle Hampson,Matthew J. Hoptman,James S. Hyde,Vesa Kiviniemi,Rolf Kötter,Shi-Jiang Li,Ching Po Lin,Mark J. Lowe,Clare E. Mackay,David J. Madden,Kristoffer Hougaard Madsen,Daniel S. Margulies,Helen S. Mayberg,Katie L. McMahon,Christopher S. Monk,Stewart H. Mostofsky,Bonnie J. Nagel,James J. Pekar,Scott Peltier,Steven E. Petersen,Valentin Riedl,Serge A.R.B. Rombouts,Bart Rypma,Bradley L. Schlaggar,Sein Schmidt,Rachael D. Seidler,Greg J. Siegle,Christian Sorg,Gao Jun Teng,Juha Veijola,Arno Villringer,Martin Walter,Lihong Wang,Xu Chu Weng,Susan Whitfield-Gabrieli,Peter C. Williamson,Christian Windischberger,Yu-Feng Zang,Hong Ying Zhang,F. Xavier Castellanos,F. Xavier Castellanos,Michael P. Milham +54 more
TL;DR: The 1000 Functional Connectomes Project (Fcon_1000) as discussed by the authors is a large-scale collection of functional connectome data from 1,414 volunteers collected independently at 35 international centers.
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DPARSF: A MATLAB Toolbox for “Pipeline” Data Analysis of Resting-State fMRI
Yan Chao-Gan,Zang Yu-Feng +1 more
TL;DR: A MATLAB toolbox called Data Processing Assistant for Resting-State fMRI (DPARSF) for "pipeline" data analysis of resting-state fMRI is developed and users can use DPARSF to extract time courses from regions of interest.
References
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Book
Co-planar stereotaxic atlas of the human brain : 3-dimensional proportional system : an approach to cerebral imaging
TL;DR: Direct and Indirect Radiologic Localization Reference System: Basal Brain Line CA-CP Cerebral Structures in Three-Dimensional Space Practical Examples for the Use of the Atlas in Neuroradiologic Examinations Three- Dimensional Atlas of a Human Brain Nomenclature-Abbreviations Anatomic Index Conclusions.
Brainmagnetic resonance imaging withcontrast dependent on blood oxygenation
TL;DR: It is demonstrated that in vivo images of brain microvasculature with image contrast reflecting the blood oxygen level can be used to provide in vivo real-time maps of blood oxygenation in the brain under normal physiological conditions.
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Dynamic magnetic resonance imaging of human brain activity during primary sensory stimulation.
Kenneth K. Kwong,John W. Belliveau,David A. Chesler,Inna E. Goldberg,Robert M. Weisskoff,Brigitte P. Poncelet,David N. Kennedy,Bernice E. Hoppel,Mark S. Cohen,Robert Turner,Hong-Ming Cheng,Thomas J. Brady,Bruce R. Rosen +12 more
TL;DR: In this paper, a series of images were acquired continuously with the same imaging pulse sequence (either gradient echo or spin-echo inversion recovery) during task activation, and a significant increase in signal intensity (paired t test; P less than 0.001) of 1.8% +/- 0.9% was observed in the primary visual cortex (V1) of seven normal volunteers.
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Intrinsic signal changes accompanying sensory stimulation: functional brain mapping with magnetic resonance imaging
Seiji Ogawa,David W. Tank,Ravi S. Menon,Jutta M. Ellermann,Seong-Gi Kim,Hellmut Merkle,Kamil Ugurbil +6 more
TL;DR: It is reported that visual stimulation produces an easily detectable (5-20%) transient increase in the intensity of water proton magnetic resonance signals in human primary visual cortex in gradient echo images at 4-T magnetic-field strength.
Journal ArticleDOI
Automatic 3D intersubject registration of MR volumetric data in standardized Talairach space
TL;DR: A fully automatic registration method to map volumetric data into stereotaxic space that yields results comparable with those of manually based techniques and therefore does not suffer the drawbacks involved in user intervention.