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Open AccessJournal ArticleDOI

Applications of single-cell sequencing in cancer research: progress and perspectives

TLDR
The use of single-cell sequencing in cancer research has revolutionized our understanding of the biological characteristics and dynamics within cancer lesions, including information related to the landscapes of malignant cells and immune cells, tumor heterogeneity, circulating tumor cells and underlying mechanisms of tumor biological behaviors as mentioned in this paper.
Abstract
Single-cell sequencing, including genomics, transcriptomics, epigenomics, proteomics and metabolomics sequencing, is a powerful tool to decipher the cellular and molecular landscape at a single-cell resolution, unlike bulk sequencing, which provides averaged data. The use of single-cell sequencing in cancer research has revolutionized our understanding of the biological characteristics and dynamics within cancer lesions. In this review, we summarize emerging single-cell sequencing technologies and recent cancer research progress obtained by single-cell sequencing, including information related to the landscapes of malignant cells and immune cells, tumor heterogeneity, circulating tumor cells and the underlying mechanisms of tumor biological behaviors. Overall, the prospects of single-cell sequencing in facilitating diagnosis, targeted therapy and prognostic prediction among a spectrum of tumors are bright. In the near future, advances in single-cell sequencing will undoubtedly improve our understanding of the biological characteristics of tumors and highlight potential precise therapeutic targets for patients.

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Glioma Stem Cells: Novel Data Obtained by Single-Cell Sequencing

TL;DR: In this paper , the authors discuss the modern concept of glioma stem cells and recent single-cell sequencing-driven progress in the research of intratumoral Glioma cell heterogeneity, focusing on the recently revealed variations of the cell composition of the adult-type diffuse gliomas.
Journal ArticleDOI

Exploration of the impact of multimode thermal therapy versus radiofrequency ablation on CD8+ T effector cells of liver malignancies based on single cell transcriptomics

TL;DR: In this paper , the effect of multimode thermal therapy (MTT) on the peripheral immune environment and the mechanisms underlying the enhanced prognosis have yet to be explored, and the authors further investigate the mechanisms responsible for the difference in prognosis between the two therapies.
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ScRNA-seq and bulk RNA-seq reveal the characteristics of ferroptosis and establish a risk signature in cholangiocarcinoma

TL;DR: Banales et al. as mentioned in this paper used CIBERSORT to identify cellular immune scores and found that monocytes had significantly infiltrated and were correlated with prognosis in cholangiocarcinoma.
Journal ArticleDOI

Recent Advances in Translational Research for Heart Failure in Japan.

TL;DR: In this paper , the authors summarize the recent advances in translational research on heart failure in Japan, based mainly on their studies, and summarize some of the most relevant studies in the literature.
Journal ArticleDOI

Single cell sequencing revealed the mechanism of PD-1 resistance affected by the expression profile of peripheral blood immune cells in ESCC

TL;DR: In this paper , the authors extracted and isolated immune cells from peripheral blood of patients with PD-1 monoclonal antibody sensitivity and resistance, and conducted deep single-cell RNA sequencing to describe the baseline landscape of the composition, lineage, and functional status of infiltrating immune cells in patients with esophageal cancer.
References
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Journal ArticleDOI

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

TL;DR: The feasibility of analyzing an individual's epigenome on a timescale compatible with clinical decision-making is demonstrated and classes of DNA-binding factors that strictly avoided, could tolerate or tended to overlap with nucleosomes are discovered.
Journal ArticleDOI

Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells

TL;DR: This work has developed a high-throughput droplet-microfluidic approach for barcoding the RNA from thousands of individual cells for subsequent analysis by next-generation sequencing, which shows a surprisingly low noise profile and is readily adaptable to other sequencing-based assays.
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