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Open AccessJournal ArticleDOI

Comprehensive Identification of Cell Cycle–regulated Genes of the Yeast Saccharomyces cerevisiae by Microarray Hybridization

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TLDR
A comprehensive catalog of yeast genes whose transcript levels vary periodically within the cell cycle is created, and it is found that the mRNA levels of more than half of these 800 genes respond to one or both of these cyclins.
Abstract
We sought to create a comprehensive catalog of yeast genes whose transcript levels vary periodically within the cell cycle. To this end, we used DNA microarrays and samples from yeast cultures sync...

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Citations
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Journal ArticleDOI

Comparison of evolutionary algorithms in gene regulatory network model inference.

TL;DR: An analysis of several existing evolutionary algorithms for quantitative gene regulatory network modelling is performed, and ability to reproduce biological behaviour, scalability and robustness to noise are assessed and compared.
Journal ArticleDOI

Relationship between the function and the location of G1 cyclins in S. cerevisiae.

TL;DR: The data supports the hypothesis that Cln2 and Cln3 have distinct functions and locations, and the specificity of cyclin-dependent kinases is mediated in part by subcellular location.
Journal ArticleDOI

Bayesian Estimation of the von-Mises Fisher Mixture Model with Variational Inference

TL;DR: The proposed algorithm can potentially determine the model complexity and avoid the over-fitting problem associated with conventional approaches based on the expectation maximization, and derive an analytically tractable approximation to the predictive density of the Bayesian mixture model of vMF distributions.
Proceedings ArticleDOI

An integrated probabilistic model for functional prediction of proteins

TL;DR: An integrated probabilistic model to combine protein physical interactions, genetic interactions, highly correlated gene expression network, protein complex data, and domain structures of individual proteins to predict protein functions is developed.
Journal ArticleDOI

Exit from Exit: Resetting the Cell Cycle through Amn1 Inhibition of G Protein Signaling

TL;DR: It is found that daughter cells activate an Antagonist of MEN pathway (AMEN) in part through induction of the Amn1 protein that binds directly to Tem1 and prevents its association with its target kinase Cdc15 in G1.
References
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Journal ArticleDOI

Cluster analysis and display of genome-wide expression patterns

TL;DR: A system of cluster analysis for genome-wide expression data from DNA microarray hybridization is described that uses standard statistical algorithms to arrange genes according to similarity in pattern of gene expression, finding in the budding yeast Saccharomyces cerevisiae that clustering gene expression data groups together efficiently genes of known similar function.
Journal ArticleDOI

Real time quantitative PCR.

TL;DR: Unlike other quantitative PCR methods, real-time PCR does not require post-PCR sample handling, preventing potential PCR product carry-over contamination and resulting in much faster and higher throughput assays.
Journal ArticleDOI

Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale

TL;DR: DNA microarrays containing virtually every gene of Saccharomyces cerevisiae were used to carry out a comprehensive investigation of the temporal program of gene expression accompanying the metabolic shift from fermentation to respiration, and the expression patterns of many previously uncharacterized genes provided clues to their possible functions.
Book ChapterDOI

Getting started with yeast.

TL;DR: The yeast Saccharomyces cerevisiae is now recognized as a model system representing a simple eukaryote whose genome can be easily manipulated and made particularly accessible to gene cloning and genetic engineering techniques.
Journal ArticleDOI

A Genome-Wide Transcriptional Analysis of the Mitotic Cell Cycle

TL;DR: The genome-wide characterization of mRNA transcript levels during the cell cycle of the budding yeast S. cerevisiae indicates a mechanism for local chromosomal organization in global mRNA regulation and links a range of human genes to cell cycle period-specific biological functions.
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