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Journal ArticleDOI

Gene regulation by transcription factors and microRNAs.

Oliver Hobert
- 28 Mar 2008 - 
- Vol. 319, Iss: 5871, pp 1785-1786
TLDR
Common principles of transcription factor– and microRNA-mediated gene regulatory events are reviewed and conceptual differences in how these factors control gene expression are discussed.
Abstract
The properties of a cell are determined by the genetic information encoded in its genome. Understanding how such information is differentially and dynamically retrieved to define distinct cell types and cellular states is a major challenge facing molecular biology. Gene regulatory factors that control the expression of genomic information come in a variety of flavors, with transcription factors and microRNAs representing the most numerous gene regulatory factors in multicellular genomes. Here, I review common principles of transcription factor- and microRNA-mediated gene regulatory events and discuss conceptual differences in how these factors control gene expression.

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Citations
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Journal ArticleDOI

MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation

TL;DR: The findings demonstrate the abundance of CDS-located miRNA targets, some of which can be species-specific, and support an augmented model whereby animal miRNAs exercise their control on mRNAs through targets that can reside beyond the 3′ untranslated region.
Journal ArticleDOI

Biological principles of microRNA-mediated regulation: shared themes amid diversity

TL;DR: Emergent themes are now beginning to illustrate how microRNAs have been incorporated into diverse settings, including potent inhibition of individual key targets, fine-tuning of target activity, the coordinated regulation of target batteries, and the reversibility of some aspects of microRNA-mediated repression.
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Chondrocyte Apoptosis in the Pathogenesis of Osteoarthritis

TL;DR: Because current treatments for OA act only on symptoms and do not prevent or cure OA, chondrocyte apoptosis would be a valid target to modulate cartilage degeneration.
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miR390, Arabidopsis TAS3 tasiRNAs, and Their AUXIN RESPONSE FACTOR Targets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

TL;DR: This work demonstrates that miR390, TAS3-derived trans-acting short-interfering RNAs (tasiRNAs), and AUXIN RESPONSE FACTORS (ARFs) form an auxin-responsive regulatory network controlling lateral root growth and integrates with auxin signaling to quantitatively regulate organ growth during development.
References
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Journal ArticleDOI

MicroRNA expression profiles classify human cancers

TL;DR: A new, bead-based flow cytometric miRNA expression profiling method is used to present a systematic expression analysis of 217 mammalian miRNAs from 334 samples, including multiple human cancers, and finds the miRNA profiles are surprisingly informative, reflecting the developmental lineage and differentiation state of the tumours.
Journal ArticleDOI

MicroRNA targeting specificity in mammals: determinants beyond seed pairing.

TL;DR: Five general features of site context that boost site efficacy are uncovered: AU-rich nucleotide composition near the site, proximity to sites for coexpressed miRNAs (which leads to cooperative action), proximity to residues pairing to miRNA nucleotides 13-16, positioning within the 3'UTR at least 15 nt from the stop codon, and positioning away from the center of long UTRs.
BookDOI

An introduction to systems biology : design principles of biological circuits

Uri Alon
TL;DR: The Robustness Principle can Distinguish Between Mechanisms of Fruit Fly Patterning and Kinetic Proofreading of the Genetic Code can reduce Error Rates of Molecular Recognition Recognition recognition.
Journal ArticleDOI

Switching from repression to activation: microRNAs can up-regulate translation.

TL;DR: It is proposed that translation regulation by microRNPs oscillates between repression and activation during the cell cycle, and two well-studied microRNAs—Let-7 and the synthetic microRNA miRcxcr4—likewise induce translation up-regulation of target mRNAs on cell cycle arrest.
Journal ArticleDOI

A brain-specific microRNA regulates dendritic spine development

TL;DR: It is shown that a brain-specific microRNA, miR-134>, is localized to the synapto-dendritic compartment of rat hippocampal neurons and negatively regulates the size of dendritic spines—postsynaptic sites of excitatory synaptic transmission.
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