Citations
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Atomic resolution structure of Erwinia chrysanthemi L-asparaginase
Jacek Lubkowski,Miroslawa Dauter,Miroslawa Dauter,Khosrow Aghaiypour,Alexander Wlodawer,Zbigniew Dauter +5 more
TL;DR: An X-ray structure of L-asparaginase from Erwinia chrysanthemi (ErA) has been refined at 1 A resolution to an R factor of below 0.1, which should provide a good basis for future studies of the conformational variability of proteins, identification of subtle conformational features and corroboration of the stereochemical libraries.
Journal ArticleDOI
Native sulfur/chlorine SAD phasing for serial femtosecond crystallography.
Takanori Nakane,Changyong Song,Mamoru Suzuki,Eriko Nango,Jun Kobayashi,Tetsuya Masuda,Shigeyuki Inoue,Eiichi Mizohata,Toru Nakatsu,Tomoyuki Tanaka,Rie Tanaka,Tatsuro Shimamura,K. Tono,Yasumasa Joti,Takashi Kameshima,Takaki Hatsui,Makina Yabashi,Osamu Nureki,So Iwata,Michihiro Sugahara +19 more
TL;DR: Sulfur SAD phasing facilitates the structure determination of diverse native proteins using femtosecond X-rays from free-electron lasers via serial femTosecond crystallography.
Journal ArticleDOI
Development of a synchrotron biaxial tensile device for in situ characterization of thin films mechanical response
Guillaume Geandier,Dominique Thiaudière,R. Randriamazaoro,R. Chiron,Soundès Djaziri,B. Lamongie,Y. Diot,E. Le Bourhis,Pierre-Olivier Renault,Philippe Goudeau,A. Bouaffad,Olivier Castelnau,Damien Faurie,François Hild +13 more
TL;DR: On the DIFFABS-SOLEIL beamline a biaxial tensile machine working in the synchrotron environment for in situ diffraction characterization of thin polycrystalline films mechanical response, preliminary tests on 150 nm thick W films deposited onto polyimide cruciform substrates are presented.
Journal ArticleDOI
Automatic multiple-zone rigid-body refinement with a large convergence radius
Pavel V. Afonine,Ralf W. Grosse-Kunstleve,Alexandre Urzhumtsev,Alexandre Urzhumtsev,Paul D. Adams,Paul D. Adams +5 more
TL;DR: Systematic investigation of a large number of trial rigid-body refinements leads to an optimized multiple-zone protocol with a larger convergence radius.
Journal ArticleDOI
High-order analytic translation matrix elements for real-space six-dimensional polar Fourier correlations
TL;DR: In this article, analytical expressions for calculating translations of high-order three-dimensional expansions of orthonormal real spherical harmonic and Gaussian-type or exponential-type radial basis functions are presented.
References
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Journal ArticleDOI
The Protein Data Bank
Helen M. Berman,John D. Westbrook,Zukang Feng,Gary L. Gilliland,Talapady N. Bhat,Helge Weissig,Ilya N. Shindyalov,Philip E. Bourne +7 more
TL;DR: The goals of the PDB are described, the systems in place for data deposition and access, how to obtain further information and plans for the future development of the resource are described.
Journal ArticleDOI
Crystal structure refinement with SHELXL
TL;DR: New features added to the refinement program SHELXL since 2008 are described and explained.
Journal ArticleDOI
Coot: model-building tools for molecular graphics.
Paul Emsley,Kevin Cowtan +1 more
TL;DR: CCP4mg is a project that aims to provide a general-purpose tool for structural biologists, providing tools for X-ray structure solution, structure comparison and analysis, and publication-quality graphics.
Journal ArticleDOI
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Paul D. Adams,Paul D. Adams,Pavel V. Afonine,Gábor Bunkóczi,Vincent B. Chen,Ian W. Davis,Nathaniel Echols,Jeffrey J. Headd,Li-Wei Hung,Gary J. Kapral,Ralf W. Grosse-Kunstleve,Airlie J. McCoy,Nigel W. Moriarty,Robert D. Oeffner,Randy J. Read,David S. Richardson,Jane S. Richardson,Thomas C. Terwilliger,Peter H. Zwart +18 more
TL;DR: The PHENIX software for macromolecular structure determination is described and its uses and benefits are described.
Journal ArticleDOI
Phaser crystallographic software
Airlie J. McCoy,Ralf W. Grosse-Kunstleve,Paul D. Adams,Martyn Winn,Laurent C. Storoni,Randy J. Read +5 more
TL;DR: A description is given of Phaser-2.1: software for phasing macromolecular crystal structures by molecular replacement and single-wavelength anomalous dispersion phasing.