Citations
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Phaser.MRage: automated molecular replacement.
Gábor Bunkóczi,Nathaniel Echols,Airlie J. McCoy,Robert D. Oeffner,Paul D. Adams,Randy J. Read +5 more
TL;DR: The functionality of the molecular-replacement pipeline phaser is introduced and MRage is illustrated with examples.
Journal ArticleDOI
Assigning genomic sequences to CATH.
Frances M. G. Pearl,David A. Lee,James E. Bray,Ian Sillitoe,Annabel E. Todd,Andrew Harrison,Janet M. Thornton,Christine A. Orengo +7 more
TL;DR: The CATH Dictionary of Homologous Superfamilies (DHS), which contains validated multiple structural alignments annotated with consensus functional information for evolutionary protein superfamilies, has been updated to include annotations associated with sequence relatives identified in GenBank.
Journal ArticleDOI
Functional architecture of RNA polymerase I.
Claus-D. Kuhn,Sebastian R. Geiger,Sonja Baumli,Marco Gartmann,Jochen Gerber,Stefan Jennebach,Thorsten Mielke,Herbert Tschochner,Roland Beckmann,Patrick Cramer +9 more
TL;DR: A cryo-electron microscopic structure for the complete 14-subunit yeast Pol I, a homology model for the core enzyme, and the crystal structure of the subcomplex A14/43 are reported, which enables ribosomal RNA proofreading and 3'-end trimming.
Journal ArticleDOI
Advanced grazing-incidence techniques for modern soft-matter materials analysis.
TL;DR: Advanced grazing-incidence techniques have developed significantly and novel methods have emerged which allow for an in-depth morphology characterization of modern soft-matter materials, including the potential to investigate polarization.
Journal ArticleDOI
Orientation image-based micromechanical modelling of subgrain texture evolution in polycrystalline copper
TL;DR: An efficient full-field formulation based on fast Fourier transforms (FFTs) for the prediction of the viscoplastic deformation of polycrystals is applied to the study of the subgrain texture and microstructure evolution in polycrystalline Cu deformed under tension as mentioned in this paper.
References
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Journal ArticleDOI
The Protein Data Bank
Helen M. Berman,John D. Westbrook,Zukang Feng,Gary L. Gilliland,Talapady N. Bhat,Helge Weissig,Ilya N. Shindyalov,Philip E. Bourne +7 more
TL;DR: The goals of the PDB are described, the systems in place for data deposition and access, how to obtain further information and plans for the future development of the resource are described.
Journal ArticleDOI
Crystal structure refinement with SHELXL
TL;DR: New features added to the refinement program SHELXL since 2008 are described and explained.
Journal ArticleDOI
Coot: model-building tools for molecular graphics.
Paul Emsley,Kevin Cowtan +1 more
TL;DR: CCP4mg is a project that aims to provide a general-purpose tool for structural biologists, providing tools for X-ray structure solution, structure comparison and analysis, and publication-quality graphics.
Journal ArticleDOI
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Paul D. Adams,Paul D. Adams,Pavel V. Afonine,Gábor Bunkóczi,Vincent B. Chen,Ian W. Davis,Nathaniel Echols,Jeffrey J. Headd,Li-Wei Hung,Gary J. Kapral,Ralf W. Grosse-Kunstleve,Airlie J. McCoy,Nigel W. Moriarty,Robert D. Oeffner,Randy J. Read,David S. Richardson,Jane S. Richardson,Thomas C. Terwilliger,Peter H. Zwart +18 more
TL;DR: The PHENIX software for macromolecular structure determination is described and its uses and benefits are described.
Journal ArticleDOI
Phaser crystallographic software
Airlie J. McCoy,Ralf W. Grosse-Kunstleve,Paul D. Adams,Martyn Winn,Laurent C. Storoni,Randy J. Read +5 more
TL;DR: A description is given of Phaser-2.1: software for phasing macromolecular crystal structures by molecular replacement and single-wavelength anomalous dispersion phasing.