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Journal ArticleDOI

Metabolomics-on-a-chip and predictive systems toxicology in microfluidic bioartificial organs.

TLDR
The integration of microtechnology, cell culture in microfluidic biochips, and metabolic profiling opens the development of so-called "metabolomics-on-a-chip" assays in pharmaceutical and environmental toxicology.
Abstract
The world faces complex challenges for chemical hazard assessment. Microfluidic bioartificial organs enable the spatial and temporal control of cell growth and biochemistry, critical for organ-specific metabolic functions and particularly relevant to testing the metabolic dose–response signatures associated with both pharmaceutical and environmental toxicity. Here we present an approach combining a microfluidic system with 1H NMR-based metabolomic footprinting, as a high-throughput small-molecule screening approach. We characterized the toxicity of several molecules: ammonia (NH3), an environmental pollutant leading to metabolic acidosis and liver and kidney toxicity; dimethylsulfoxide (DMSO), a free radical-scavenging solvent; and N-acetyl-para-aminophenol (APAP, or paracetamol), a hepatotoxic analgesic drug. We report organ-specific NH3 dose-dependent metabolic responses in several microfluidic bioartificial organs (liver, kidney, and cocultures), as well as predictive (99% accuracy for NH3 and 94% for ...

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Journal ArticleDOI

Microfluidic organs-on-chips

TL;DR: A microfluidic cell culture device created with microchip manufacturing methods that contains continuously perfused chambers inhabited by living cells arranged to simulate tissue- and organ-level physiology has great potential to advance the study of tissue development, organ physiology and disease etiology.
Journal ArticleDOI

Advantages and challenges of microfluidic cell culture in polydimethylsiloxane devices.

TL;DR: This review outlines some of the advantages and challenges that may accompany a transition from macroscopic to microfluidic cell culture and focuses on decisive factors that distinguish Macroscopic from microfluidity cell culture to encourage a reconsideration of how macroscopy cell culture principles might apply to micro fluidiccell culture.
Journal ArticleDOI

Advances in microfluidic materials, functions, integration, and applications.

TL;DR: The successful demonstration of electrophoresis and electroosmotic pumping in a microfluidic device provided a nonmechanical method for both fluid control and separation, and integration of multiple processes can be highly enabling for many applications.
Journal ArticleDOI

Organ-on-a-chip platforms for studying drug delivery systems.

TL;DR: The importance of integrating microfluidic networks with 3D tissue engineered models to create organ-on-a-chip platforms, able to meet the demand of creating robust preclinical screening models, is highlighted to reduce the discrepancies between their performance at preclinical and clinical trials.
Journal ArticleDOI

Systems toxicology: from basic research to risk assessment.

TL;DR: Systems Toxicology approaches offer modern strategies for gaining mechanistic knowledge by combining advanced analytical and computational tools, and integrates current knowledge regarding bioanalytical approaches, computational analysis, and the potential for improved risk assessment.
References
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Journal ArticleDOI

KEGG: Kyoto Encyclopedia of Genes and Genomes

TL;DR: The Kyoto Encyclopedia of Genes and Genomes (KEGG) as discussed by the authors is a knowledge base for systematic analysis of gene functions in terms of the networks of genes and molecules.
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The origins and the future of microfluidics

TL;DR: The manipulation of fluids in channels with dimensions of tens of micrometres — microfluidics — has emerged as a distinct new field that has the potential to influence subject areas from chemical synthesis and biological analysis to optics and information technology.
Journal ArticleDOI

'metabonomics': understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological nmr spectroscopic data

TL;DR: Metabonomics: understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic data by using NMR data from Xenobiotica.
Journal ArticleDOI

ROCR: visualizing classifier performance in R

TL;DR: UNLABELLED ROCR is a package for evaluating and visualizing the performance of scoring classifiers in the statistical language R that features over 25 performance measures that can be freely combined to create two-dimensional performance curves.
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