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The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis

TLDR
It is proposed that DAWDLE (DDL), an FHA domain-containing protein in Arabidopsis, acts in the biogenesis of miRNAs and endogenous siRNAs by facilitating DCL1 to access or recognize pri-miRNAs.
Abstract
Proteins containing the forkhead-associated domain (FHA) are known to act in biological processes such as DNA damage repair, protein degradation, and signal transduction. Here we report that DAWDLE (DDL), an FHA domain-containing protein in Arabidopsis, acts in the biogenesis of miRNAs and endogenous siRNAs. Unlike mutants of genes known to participate in the processing of miRNA precursors, such as dcl1, hyponastic leaves1, and serrate, ddl mutants show reduced levels of pri-miRNAs as well as mature miRNAs. Promoter activity of MIR genes, however, is not affected by ddl mutations. DDL is an RNA binding protein and is able to interact with DCL1. In addition, we found that SNIP1, the human homolog of DDL, is involved in miRNA biogenesis and interacts with Drosha. Therefore, we uncovered an evolutionarily conserved factor in miRNA biogenesis. We propose that DDL participates in miRNA biogenesis by facilitating DCL1 to access or recognize pri-miRNAs.

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The widespread regulation of microRNA biogenesis, function and decay.

TL;DR: This work has shown that the regulation of miRNA metabolism and function by a range of mechanisms involving numerous protein–protein and protein–RNA interactions has an important role in the context-specific functions of miRNAs.
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Biogenesis of small RNAs in animals.

TL;DR: This Review summarizes the current knowledge of how these intriguing molecules are generated in animal cells.
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Origin, biogenesis, and activity of plant microRNAs.

TL;DR: Current advances in understanding of the origin, biogenesis, and mode of action of plant miRNAs are discussed and comparisons with their metazoan counterparts are drawn.
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Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

TL;DR: Understanding how small RNAs regulate gene expression will enable researchers to explore the role of smallRNAs in biotic and abiotic stress responses, and this review focuses on the regulatory roles of plant small RN as in the adaptive response to stresses.
Journal ArticleDOI

Small RNAs and Their Roles in Plant Development

TL;DR: The biogenesis and function of three major classes of endogenous small RNAs in plants: microRNAs, trans-acting si RNAs, and heterochromatic siRNAs are reviewed, with an emphasis on the roles of these smallRNAs in developmental regulation.
References
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Journal ArticleDOI

MicroRNAs: Genomics, Biogenesis, Mechanism, and Function

TL;DR: Although they escaped notice until relatively recently, miRNAs comprise one of the more abundant classes of gene regulatory molecules in multicellular organisms and likely influence the output of many protein-coding genes.
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The nuclear RNase III Drosha initiates microRNA processing

TL;DR: The two RNase III proteins, Drosha and Dicer, may collaborate in the stepwise processing of miRNAs, and have key roles in miRNA-mediated gene regulation in processes such as development and differentiation.
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microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants

TL;DR: Data support a model in which miRNA-guided formation of a 5' or 3' terminus within pre-ta-siRNA transcripts, followed by RDR6-dependent formation of dsRNA and Dicer-like processing, yields phased ta-siRNAs that negatively regulate other genes.
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An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus.

TL;DR: A system based on co-expression of a viral-encoded suppressor of gene silencing, the p19 protein of tomato bushy stunt virus, that prevents the onset of PTGS in the infiltrated tissues and allows high level of transient expression is described.
Journal ArticleDOI

A MicroRNA as a Translational Repressor of APETALA2 in Arabidopsis Flower Development

TL;DR: MiRNA172 likely acts in cell-fate specification as a translational repressor of APETALA2 in Arabidopsis flower development and results in floral organ identity defects similar to those in loss-of-function apetala2 mutants.
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