Showing papers on "Heterosis published in 2014"

Genome Properties and Prospects of Genomic Prediction of Hybrid Performance in a Breeding Program of Maize

Abstract: Maize (Zea mays L.) serves as model plant for heterosis research and is the crop where hybrid breeding was pioneered. We analyzed genomic and phenotypic data of 1254 hybrids of a typical maize hybrid breeding program based on the important Dent × Flint heterotic pattern. Our main objectives were to investigate genome properties of the parental lines (e.g., allele frequencies, linkage disequilibrium, and phases) and examine the prospects of genomic prediction of hybrid performance. We found high consistency of linkage phases and large differences in allele frequencies between the Dent and Flint heterotic groups in pericentromeric regions. These results can be explained by the Hill–Robertson effect and support the hypothesis of differential fixation of alleles due to pseudo-overdominance in these regions. In pericentromeric regions we also found indications for consistent marker–QTL linkage between heterotic groups. With prediction methods GBLUP and BayesB, the cross-validation prediction accuracy ranged from 0.75 to 0.92 for grain yield and from 0.59 to 0.95 for grain moisture. The prediction accuracy of untested hybrids was highest, if both parents were parents of other hybrids in the training set, and lowest, if none of them were involved in any training set hybrid. Optimizing the composition of the training set in terms of number of lines and hybrids per line could further increase prediction accuracy. We conclude that genomic prediction facilitates a paradigm shift in hybrid breeding by focusing on the performance of experimental hybrids rather than the performance of parental lines in testcrosses.

Utilization of crop heterosis: a review

Abstract: Heterosis (or hybrid vigor) is a natural phenomenon whereby hybrid offspring of genetically diverse individuals display improved physical and functional characteristics relative to their parents. Heterosis has been increasingly applied in crop production for nearly a century, with the aim of developing more vigorous, higher yielding and better performing cultivars. In this review we present and compare three categories of crop heterosis utilization: intraspecific heterosis, intersubspecific heterosis and wide-hybridization heterosis, with particular focus on polyploid species. Different pollination-control systems used to breed for heterosis are also comparatively analyzed. Finally, we highlight problems involved in heterosis research and crop improvement. We aim to provide insight into best practices for amplifying heterosis potential.

Maize ARGOS1 (ZAR1) transgenic alleles increase hybrid maize yield

Abstract: Crop improvement for yield and drought tolerance is challenging due to the complex genetic nature of these traits and environmental dependencies. This study reports that transgenic over-expression of Zea mays AR GOS1 (ZAR1) enhanced maize organ growth, grain yield, and drought-stress tolerance. The ZAR1 transgene exhibited environmental interactions, with yield increase under Temperate Dry and yield reduction under Temperate Humid or High Latitude environments. Native ZAR1 allele variation associated with drought-stress tolerance. Two founder alleles identified in the mid-maturity germplasm of North America now predominate in Pioneer's modern breeding programme, and have distinct proteins, promoters and expression patterns. These two major alleles show heterotic group partitioning, with one predominant in Pioneer's female and the other in the male heterotic groups, respectively. These two alleles also associate with favourable crop performance when heterozygous. Allele-specific transgene testing showed that, of the two alleles discussed here, each allele differed in their impact on yield and environmental interactions. Moreover, when transgenically stacked together the allelic pair showed yield and environmental performance advantages over either single allele, resembling heterosis effects. This work demonstrates differences in transgenic efficacy of native alleles and the differences reflect their association with hybrid breeding performance.

Intraspecific Arabidopsis hybrids show different patterns of heterosis despite the close relatedness of the parental genomes

Abstract: Heterosis is important for agriculture; however, little is known about the mechanisms driving hybrid vigor. Ultimately, heterosis depends on the interactions of specific alleles and epialleles provided by the parents, which is why hybrids can exhibit different levels of heterosis, even within the same species. We characterize the development of several intraspecific Arabidopsis (Arabidopsis thaliana) F1 hybrids that show different levels of heterosis at maturity. We identify several phases of heterosis beginning during embryogenesis and culminating in a final phase of vegetative maturity and seed production. During each phase, the hybrids show different levels and patterns of growth, despite the close relatedness of the parents. For instance, during the vegetative phases, the hybrids develop larger leaves than the parents to varied extents, and they do so by exploiting increases in cell size and cell numbers in different ratios. Consistent with this finding, we observed changes in the expression of genes known to regulate leaf size in developing rosettes of the hybrids, with the patterns of altered expression differing between combinations. The data show that heterosis is dependent on changes in development throughout the growth cycle of the hybrid, with the traits of mature vegetative biomass and reproductive yield as cumulative outcomes of heterosis at different levels, tissues, and times of development.

Mapping QTLs of yield-related traits using RIL population derived from common wheat and Tibetan semi-wild wheat

Abstract: QTLs controlling yield-related traits were mapped using a population derived from common wheat and Tibetan semi-wild wheat and they provided valuable information for using Tibetan semi-wild wheat in future wheat molecular breeding. Tibetan semi-wild wheat (Triticum aestivum ssp tibetanum Shao) is a kind of primitive hexaploid wheat and harbors several beneficial traits, such as tolerance to biotic and abiotic stresses. And as a wild relative of common wheat, heterosis of yield of the progeny between them was significant. This study focused on mapping QTLs controlling yield-related traits using a recombined inbred lines (RILs) population derived from a hybrid between a common wheat line NongDa3331 (ND3331) and the Tibetan semi-wild wheat accession Zang 1817. In nine location–year environments, a total of 148 putative QTLs controlling nine traits were detected, distributed on 19 chromosomes except for 1A and 2D. Single QTL explained the phenotypic variation ranging from 3.12 to 49.95 %. Of these QTLs, 56 were contributed by Zang 1817. Some stable QTLs contributed by Zang 1817 were also detected in more than four environments, such as QPh-3A1, QPh-4B1 and QPh-4D for plant height, QSl-7A1 for spike length, QEp-4B2 for ears per plant, QGws-4D for grain weight per spike, and QTgw-4D for thousand grain weight. Several QTL-rich Regions were also identified, especially on the homoeologous group 4. The TaANT gene involved in floral organ development was mapped on chromosome 4A between Xksm71 and Xcfd6 with 0.8 cM interval, and co-segregated with the QTLs controlling floret number per spikelet, explaining 4.96–11.84 % of the phenotypic variation. The current study broadens our understanding of the genetic characterization of Tibetan semi-wild wheat, which will enlarge the genetic diversity of yield-related traits in modern wheat breeding program.

Genetic Variability and Selection Criteria in Rice Mutant Lines as Revealed by Quantitative Traits

Abstract: Genetic based knowledge of different vegetative and yield traits play a major role in varietal improvement of rice. Genetic variation gives room for recombinants which are essential for the development of a new variety in any crop. Based on this background, this work was carried out to evaluate genetic diversity of derived mutant lines and establish relationships between their yield and yield components using multivariate analysis. To achieve this objective, two field trials were carried out on 45 mutant rice genotypes to evaluate their growth and yield traits. Data were taken on vegetative traits and yield and its components, while genotypic and phenotypic coefficients, variance components, expected genetic advance, and heritability were calculated. All the genotypes showed variations for vegetative traits and yield and its components. Also, there was positive relationship between the quantitative traits and the final yield with the exception of number of tillers. Finally, the evaluated genotypes were grouped into five major clusters based on the assessed traits with the aid of UPGMA dendrogram. So hybridization of group I with group V or group VI could be used to attain higher heterosis or vigour among the genotypes. Also, this evaluation could be useful in developing reliable selection indices for important agronomic traits in rice.

Genetic basis of grain yield heterosis in an “immortalized F2” maize population

Abstract: Genetic basis of grain yield heterosis relies on the cumulative effects of dominance, overdominance, and epistasis in maize hybrid Yuyu22. Heterosis, i.e., when F1 hybrid phenotypes are superior to those of the parents, continues to play a critical role in boosting global grain yield. Notwithstanding our limited insight into the genetic and molecular basis of heterosis, it has been exploited extensively using different breeding approaches. In this study, we investigated the genetic underpinnings of grain yield and its components using “immortalized F2” and recombinant inbred line populations derived from the elite hybrid Yuyu22. A high-density linkage map consisting of 3,184 bins was used to assess (1) the additive and additive-by-additive effects determined using recombinant inbred lines; (2) the dominance and dominance-by-dominance effects from a mid-parent heterosis dataset; and (3) the various genetic effects in the “immortalized F2” population. Compared with a low-density simple sequence repeat map, the bin map identified more quantitative trait loci, with higher LOD scores and better accuracy of detecting quantitative trait loci. The bin map showed that, among all traits, dominance was more important to heterosis than other genetic effects. The importance of overdominance/pseudo-overdominance was proportional to the amount of heterosis. In addition, epistasis contributed to heterosis as well. Phenotypic variances explained by the QTLs detected were close to the broad-sense heritabilities of the observed traits. Comparison of the analyzed results obtained for the “immortalized F2” population with those for the mid-parent heterosis dataset indicated identical genetic modes of action for mid-parent heterosis and grain yield performance of the hybrid.

A Role for CHH Methylation in the Parent-of-Origin Effect on Altered Circadian Rhythms and Biomass Heterosis in Arabidopsis Intraspecific Hybrids

Abstract: Hybrid plants and animals often show increased levels of growth and fitness, a phenomenon known as hybrid vigor or heterosis. Circadian rhythms optimize physiology and metabolism in plants and animals. In plant hybrids and polyploids, expression changes of the genes within the circadian regulatory network, such as CIRCADIAN CLOCK ASSOCIATED1 (CCA1), lead to heterosis. However, the relationship between allelic CCA1 expression and heterosis has remained elusive. Here, we show a parent-of-origin effect on altered circadian rhythms and heterosis in Arabidopsis thaliana F1 hybrids. This parent-of-origin effect on biomass heterosis correlates with altered CCA1 expression amplitudes, which are associated with methylation levels of CHH (where H = A, T, or C) sites in the promoter region. The direction of rhythmic expression and hybrid vigor is reversed in reciprocal F1 crosses involving mutants that are defective in the RNA-directed DNA methylation pathway (argonaute4 and nuclear RNA polymerase D1a) but not in the maintenance methylation pathway (methyltransferase1 and decrease in DNA methylation1). This parent-of-origin effect on circadian regulation and heterosis is established during early embryogenesis and maintained throughout growth and development.

Determination of heterotic groups for tropical Indica hybrid rice germplasm

Abstract: Two heterotic groups and four heterotic patterns were identified for IRRI hybrid rice germplasm to develop hybrid rice in the tropics based on SSR molecular data and field trials. Information on heterotic groups and patterns is a fundamental prerequisite for hybrid crop breeding; however, no such clear information is available for tropical hybrid rice breeding after more than 30 years of hybrid rice commercialization. Based on a study of genetic diversity using molecular markers, 18 parents representing hybrid rice populations historically developed at the International Rice Research Institute (IRRI) were selected to form diallel crosses of hybrids and were evaluated in tropical environments. Yield, yield heterosis and combining ability were investigated with the main objectives of (1) evaluating the magnitude of yield heterosis among marker-based parental groups, (2) examining the consistency between marker-based group and heterotic performance of hybrids, and (3) identifying foundational hybrid parents in discrete germplasm pools to provide a reference for tropical indica hybrid rice breeding. Significant differences in yield, yield heterosis and combining ability were detected among parents and among hybrids. On average, the hybrids yielded 14.8 % higher than the parents. Results revealed that inter-group hybrids yielded higher, with higher yield heterosis than intra-group hybrids. Four heterotic patterns within two heterotic groups based on current IRRI B- and R-line germplasm were identified. Parents in two marker-based groups were identified with limited breeding value among current IRRI hybrid rice germplasm because of their lowest contribution to heterotic hybrids. Heterotic hybrids are significantly correlated with high-yielding parents. The efficiency of breeding heterotic hybrids could be enhanced using selected parents within identified marker-based heterotic groups. This information is useful for exploiting those widely distributed IRRI hybrid rice parents.

Extensive heterosis in growth of yeast hybrids is explained by a combination of genetic models

Abstract: Heterosis, also known as hybrid vigor, is the superior performance of a heterozygous hybrid relative to its homozygous parents. Despite the scientific curiosity of this phenotypic phenomenon and its significance for food production in agriculture, its genetic basis is insufficiently understood. Studying heterosis in yeast can potentially yield insights into its genetic basis, can allow one to test the different hypotheses that have been proposed to explain the phenomenon and allows better understanding of how to take advantage of this phenomenon to enhance food production. We therefore crossed 16 parental yeast strains to form 120 yeast hybrids, and measured their growth rates under five environmental conditions. A considerable amount of dominant genetic variation was found in growth performance, and heterosis was measured in 35% of the hybrid–condition combinations. Despite previous reports of correlations between heterosis and measures of sequence divergence between parents, we detected no such relationship. We used several analyses to examine which genetic model might explain heterosis. We found that dominance complementation of recessive alleles, overdominant interactions within loci and epistatic interactions among loci each contribute to heterosis. We concluded that in yeast heterosis is a complex phenotype created by the combined contribution of different genetic interactions.

Genetic combining ability and heterosis for important vitamins and antioxidant pigments in cauliflower ( Brassica oleracea var. botrytis L.)

Abstract: This study is the first report of combining ability and heterosis for important vitamins and antioxidant plant pigments in cauliflower. Five CMS lines were crossed with 8 male fertile lines in line × tester design to develop 40 hybrids. These hybrids along with parental lines were evaluated for different vitamins and anti-oxidant pigments to reveal extent of heterosis and genetic combining ability. The CMS line Ogu12A was good general combiner (gca effect) and Ogu16A was poor general combiner for most of the important traits under study. Most of the heterotic hybrid combinations were associated high specific combing ability (sca effect). However, gca effect was also important in developing quality heterotic hybrids. The proportions of $$\sigma_{\text{gca}}^{ 2} /\sigma_{\text{sca}}^{2}$$ were less than unity in all the cases indicating the role of non-additive gene action for most of the traits. Highest number of heterotic hybrids in positive direction was recorded for ascorbic acid content followed by anthocyanin content. The accumulated average heterosis of the 40 hybrids was in positive direction for ascorbic acid, anthocyanin and lycopene concentration whereas it was in negative direction for carotenoids and chlorophyll pigments. Very high heterosis for ascorbic acid, anthocyanin and carotenoids in cauliflower indicated the scope for development of F1 hybrids with higher concentration of these vitamins and anti-oxidant pigments. It is possible to develop heterotic hybrids for different vitamins and anti-oxidant plant pigments through selection of parental lines based on desirable genetic combing ability.

Genetic Variability and Correlation Studies of Grain Yield and Related Agronomic Traits in Maize

Abstract: A total of fourty two maize hybrids produced through a full diallel mating design and seven parental inbred lines were evaluated in three sites located at different agro-ecological zones in Kenya to determine the genetic parameters governing the inheritance of grain yield and related agronomical traits. The genetic parameters studied among the traits included the mean performance, genotypic variances, phenotypic variances, genotype by environment variances, broad sense heritability and phenotypic and genotypic correlation coefficients. Significant differences were recorded for all traits studied thereby revealing the diversity of the maize genotypes. The grain yield and days to maturity which showed high heritability had low genotypic variances suggesting the involvement of non-additive gene action which could be utilized through heterosis breeding. Ear height and plant height showed the highest heritability and high genotypic variances suggesting the preponderance of additive gene action. Grain yield was positively and strongly correlated with ear height and plant height. The tall plants with high ear placement gave better yields and this could be attributed to the high dry matter accumulation function carried out by the high number of leaves possessed. The positive relationships observed in this study imply that the desirable traits in these hybrids could be exploited in further breeding activities for the development of composites and synthetics for the resource constrained maize farmers who cannot access hybrid seeds every year.

Heterosis Is Prevalent Among Domesticated but Not Wild Strains of Saccharomyces cerevisiae

Abstract: Crosses between inbred but unrelated individuals often result in an increased fitness of the progeny. This phenomenon is known as heterosis and has been reported for wild and domesticated populations of plants and animals. Analysis of heterosis is often hindered by the fact that the genetic relatedness between analyzed organisms is only approximately known. We studied a collection of Saccharomyces cerevisiae isolates from wild and human-created habitats whose genomes were sequenced and thus their relatedness was fully known. We reasoned that if these strains accumulated different deleterious mutations at an approximately constant rate, then heterosis should be most visible in F1 heterozygotes from the least related parents. We found that heterosis was substantial and positively correlated with sequence divergence, but only in domesticated strains. More than 80% of the heterozygous hybrids were more fit than expected from the mean of their homozygous parents, and approximately three-quarters of those exceeded even the fittest parent. Our results support the notion that domestication brings about relaxation of selection and accumulation of deleterious mutations. However, other factors may have contributed as well. In particular, the observed build-up of genetic load might be facilitated by a decrease, and not increase, in the rate of inbreeding.

Genetic Analysis of Grain Yield and Other Traits of Early‐Maturing Maize Inbreds under Drought and Well‐Watered Conditions

Abstract: Maize (Zea mays L.) is an important staple food crop in West and Central Africa (WCA). However, its production is constrained by drought. Knowledge and understanding of the genetics of hybrid performance under drought is invaluable in designing breeding strategies for improving maize yield. One hundred and fifty hybrids obtained by crossing 30 inbreds in sets using the North Carolina Design II plus six checks were evaluated under drought and well-watered conditions for 2 years at three locations in Nigeria. The objectives of the studies were to (i) determine the mode of gene action controlling grain yield and other important agronomic traits of selected early inbred lines, (ii) examine the relationship between per se performance of inbreds and their hybrids and (iii) identify appropriate testers for maize breeding programmes in WCA. General combining ability (GCA) and specific combining ability (SCA) mean squares were significant (P < 0.01) for grain yield and other traits under the research environments. The GCA accounted for 64.5 % and 62.3 % of the total variation for grain yield under drought and well-watered conditions, indicating that additive gene action largely controlled the inheritance of grain yield of the hybrids. Narrow-sense heritability was 67 % for grain yield under drought and 49 % under well-watered conditions. The correlations between traits of early-maturing parental lines and their hybrids were significant (P < 0.01) under drought, well-watered and across environments. Mid-parent and better-parent heterosis for grain yield were 45.3 % and 18.4 % under drought stress and 111.9 % and 102.6 % under well-watered conditions. Inbreds TZEI 31, TZEI 17, TZEI 129 and TZEI 157 were identified as the best testers. Drought-tolerant hybrids with superior performance under stress and non-stress conditions could be obtained through the accumulation of favourable alleles for drought tolerance in both parental lines.

Yield-enhancing heterotic QTL transferred from wild species to cultivated rice Oryza sativa L.

Abstract: Utilization of “hidden genes” from wild species has emerged as a novel option for enrichment of genetic diversity for productivity traits. In rice we have generated more than 2000 lines having introgression from ‘A’ genome-donor wild species of rice in the genetic background of popular varieties PR114 and Pusa44 were developed. Out of these, based on agronomic acceptability, 318 lines were used for developing rice hybrids to assess the effect of introgressions in heterozygous state. These introgression lines and their recurrent parents, possessing fertility restoration ability for wild abortive (WA) cytoplasm, were crossed with cytoplasmic male sterile (CMS) line PMS17A to develop hybrids. Hybrids developed from recurrent parents were used as checks to compare the performance of 318 hybrids developed by hybridizing alien introgression lines with PMS17A. Seventeen hybrids expressed a significant increase in yield and its component traits over check hybrids. These 17 hybrids were re-evaluated in large-size replicated plots. Of these, four hybrids, viz., ILH299, ILH326, ILH867 and ILH901, having introgressions from O. rufipogon and two hybrids (ILH921 and ILH951) having introgressions from O. nivara showed significant heterosis over parental introgression line, recurrent parents and check hybrids for grain yield-related traits. Alien introgressions were detected in the lines taken as male parents for developing six superior hybrids, using a set of 100 polymorphic simple sequence repeat (SSR) markers. Percent introgression showed a range of 2.24 from in O. nivara to 7.66 from O. rufipogon. The introgressed regions and their putative association with yield components in hybrids is reported and discussed.

Analysis of the leaf methylomes of parents and their hybrids provides new insight into hybrid vigor in Populus deltoides

Abstract: Background Plants with heterosis/hybrid vigor perform better than their parents in many traits. However, the biological mechanisms underlying heterosis remain unclear. To investigate the significance of DNA methylation to heterosis, a comprehensive analysis of whole-genome DNA methylome profiles of Populus deltoides cl.'55/65' and '10/17' parental lines and their intraspecific F1 hybrids lines was performed using methylated DNA immunoprecipitation (MeDIP) and high-throughput sequencing.

Genome-wide meta-analysis of maize heterosis reveals the potential role of additive gene expression at pericentromeric loci

Abstract: The identification of QTL involved in heterosis formation is one approach to unravel the not yet fully understood genetic basis of heterosis - the improved agronomic performance of hybrid F1 plants compared to their inbred parents. The identification of candidate genes underlying a QTL is important both for developing markers and determining the molecular genetic basis of a trait, but remains difficult owing to the large number of genes often contained within individual QTL. To address this problem in heterosis analysis, we applied a meta-analysis strategy for grain yield (GY) of Zea mays L. as example, incorporating QTL-, hybrid field-, and parental gene expression data. For the identification of genes underlying known heterotic QTL, we made use of tight associations between gene expression pattern and the trait of interest, identified by correlation analyses. Using this approach genes strongly associated with heterosis for GY were discovered to be clustered in pericentromeric regions of the complex maize genome. This suggests that expression differences of sequences in recombination-suppressed regions are important in the establishment of heterosis for GY in F1 hybrids and also in the conservation of heterosis for GY across genotypes. Importantly functional analysis of heterosis-associated genes from these genomic regions revealed over-representation of a number of functional classes, identifying key processes contributing to heterosis for GY. Based on the finding that the majority of the analyzed heterosis-associated genes were addtitively expressed, we propose a model referring to the influence of cis-regulatory variation on heterosis for GY by the compensation of fixed detrimental expression levels in parents. The study highlights the utility of a meta-analysis approach that integrates phenotypic and multi-level molecular data to unravel complex traits in plants. It provides prospects for the identification of genes relevant for QTL, and also suggests a model for the potential role of additive expression in the formation and conservation of heterosis for GY via dominant, multigenic quantitative trait loci. Our findings contribute to a deeper understanding of the multifactorial phenomenon of heterosis, and thus to the breeding of new high yielding varieties.

Polyploids as a "model system" for the study of heterosis.

Abstract: Heterosis research over the past century has focused primarily on diploid plants and animals. This is despite the fact that most heterotic organisms contain polyploid events in their recent and/or ancient past and various important crop species are heterotic polyploids. We present an argument for the study of heterosis within polyploid systems and give examples of how their study can improve current hypotheses and generate new ones. Polyploid systems allow experiments not possible in diploids but the insights gained must be incorporated into models to explain heterosis at all levels.

Heterosis in Early Maize Ear Inflorescence Development: A Genome-Wide Transcription Analysis for Two Maize Inbred Lines and Their Hybrid

Abstract: Heterosis, or hybrid vigor, contributes to superior agronomic performance of hybrids compared to their inbred parents. Despite its importance, little is known about the genetic and molecular basis of heterosis. Early maize ear inflorescences formation affects grain yield, and are thus an excellent model for molecular mechanisms involved in heterosis. To determine the parental contributions and their regulation during maize ear-development-genesis, we analyzed genome-wide digital gene expression profiles in two maize elite inbred lines (B73 and Mo17) and their F1 hybrid using deep sequencing technology. Our analysis revealed 17,128 genes expressed in these three genotypes and 22,789 genes expressed collectively in the present study. Approximately 38% of the genes were differentially expressed in early maize ear inflorescences from heterotic cross, including many transcription factor genes and some presence/absence variations (PAVs) genes, and exhibited multiple modes of gene action. These different genes showing differential expression patterns were mainly enriched in five cellular component categories (organelle, cell, cell part, organelle part and macromolecular complex), five molecular function categories (structural molecule activity, binding, transporter activity, nucleic acid binding transcription factor activity and catalytic activity), and eight biological process categories (cellular process, metabolic process, biological regulation, regulation of biological process, establishment of localization, cellular component organization or biogenesis, response to stimulus and localization). Additionally, a significant number of genes were expressed in only one inbred line or absent in both inbred lines. Comparison of the differences of modes of gene action between previous studies and the present study revealed only a small number of different genes had the same modes of gene action in both maize seedlings and ear inflorescences. This might be an indication that in different tissues or developmental stages, different global expression patterns prevail, which might nevertheless be related to heterosis. Our results support the hypotheses that multiple molecular mechanisms (dominance and overdominance modes) contribute to heterosis.

Molecular characterization of tropical maize inbred lines using microsatellite DNA markers

Abstract: An insight on diversity and relationships among germplasm is important in any breeding program for crop improve¬ment. The main objectives of our study were to: (i) determine the level of genetic diversity within mid altitude maize inbred lines resistant to weevils, aflatoxin accumulation and drought, (ii) to suggest potential heterotic groups using their genetic structures and distance based on cluster analysis with the aim to generate broad based source germ¬plasm for mid altitude maize breeding program with combined traits of importance against Aflatoxin accumulation. In this study, 25 SSR markers were used to finger print forty two maize inbred lines to assess the genetic diversity, genetic relationships, and their population structure. A total of 184 alleles were identified at all the loci with an aver¬age of 7.36 and a range between two and 19 alleles per locus. The major allele frequency varied from 0.17 to 0.90 with an average of 0.49 while the minor allele frequency varied from 0.10 to 0.83 with an average of 0.51. The gene diversity values varied from 0.18 to 0.92 with an average of 0.65. Average heterozygosity percentage of the inbred lines was 4%, ranging from 0% to 2%, indicating the low level of heterozygosity within the inbred lines. The aver¬age polymorphism information content (PIC) was 0.61. A dendrogram constructed using unweighted Neighbour Joining algorithm suggested three heterotic groups among the inbred lines. The three heterotic patterns based on the SSR markers need to be verified by field testing to confirm what appears to be promising alternative heterotic patterns. The fixed pattern detected using SSR markers could potentially contribute towards effective utilization of the inbred lines for the exploitation of heterosis and formation of genetically diverse sources population.

Balance between a Higher Degree of Heterosis and Increased Reproductive Isolation: A Strategic Design for Breeding Inter-Subspecific Hybrid Rice

Abstract: The application of heterosis (hybrid vigor) has brought great success to plant breeding, particularly of hybrid rice, achieving significant yield increases. Attempts to explore the heterosis of inter-subspecific hybrids between indica and japonica rice, which result in even greater yield increases, have greatly increased in the past decades. However, because of the reduced seed setting rate in F1 hybrids as a result of increased reproductive isolation, the application of inter-subspecific hybrids in rice has slowed. Understanding the balance between heterosis and the reproductive isolation of inter-subspecific hybrids will facilitate the strategic design of inter-subspecific hybrid breeding. In this study, five indica and seven japonica rice varieties were chosen as the parental lines of a complete diallel mating design. Data from six group traits from all of the hybrids and inbred lines were collected. We found that the grain weight per plant, grain number per panicle, tiller per plant, thousand grain weight and plant height, which reflected increased heterosis, were associated with the genetic divergence index (GDI) of the parents. Meanwhile, owing to the reduced seed setting rate, which was also associated with the parents' GDI, the grain production of the hybrids was negatively affected. After analyzing the relationships between the GDI of indica-japonica parents and the grain weight per plant of the F1 hybrids, an ideal GDI value (0.37) for the two indica-japonica parents that could provide an optimal balance between the inter-subspecific heterosis and reproductive isolation was proposed. Our findings will help in the strategic design of an inter-subspecific hybrid rice breeding program by identifying the ideal indica and japonica parents for a hybrid combination to achieve hybrid rice with an optimal yield. This strategic design of an inter-subspecific hybrid rice breeding program will be time saving and cost effective.

Heterosis Studies for Yield and Yield Attributing Characters in Brinjal (Solanum melongena L.)

Abstract: Genetical studies on fruit yield per plant and its attributing traits were conducted following line x tester mating design comprising of 5 lines and 4 testers at Regional Horticulture Research Station, Navsari Agricultural University, Navsari. There was high heterosis response in most of the hybrids which supports the role of non-additive gene effects. The maximum heterosis for fruit yield per plant was observed in the cross AB-8/5 x GJB-2 (103.59%) followed by AB 8/5 x GBL 1 (41.52%) and JBR 6/7 x GJB 2 (35.17%). The hybrid AB 8/5 x GJB 2 also exhibited highly significant heterosis (245.26%) for number of fruits per cluster while the hybrid JBR 6/7 x GJB 2 showed significant heterosis (17.53%) for average fruit weight. Some of the promising hybrids showed desirable heterosis for earliness, number of flowers per cluster, phenol content.

Risk assessment of inbreeding and outbreeding depression in a captive-breeding program.

Abstract: Captive-breeding programs can be implemented to preserve the genetic diversity of endangered populations such that the controlled release of captive-bred individuals into the wild may promote recovery. A common difficulty, however, is that programs are founded with limited wild broodstock, and inbreeding can become increasingly difficult to avoid with successive generations in captivity. Program managers must choose between maintaining the genetic purity of populations, at the risk of inbreeding depression, or interbreeding populations, at the risk of outbreeding depression. We evaluate these relative risks in a captive-breeding program for 3 endangered populations of Atlantic salmon (Salmo salar). In each of 2 years, we released juvenile F(1) and F(2) interpopulation hybrids, backcrosses, as well as inbred and noninbred within-population crosstypes into 9 wild streams. Juvenile size and survival was quantified in each year. Few crosstype effects were observed, but interestingly, the relative fitness consequences of inbreeding and outbreeding varied from year to year. Temporal variation in environmental quality might have driven some of these annual differences, by exacerbating the importance of maternal effects on juvenile fitness in a year of low environmental quality and by affecting the severity of inbreeding depression differently in different years. Nonetheless, inbreeding was more consistently associated with a negative effect on fitness, whereas the consequences of outbreeding were less predictable. Considering the challenges associated with a sound risk assessment in the wild and given that the effect of inbreeding on fitness is relatively predictable, we suggest that risk can be weighted more strongly in terms of the probable outcome of outbreeding. Factors such as genetic similarities between populations and the number of generations in isolation can sometimes be used to assess outbreeding risk, in lieu of experimentation.

Assessment of Genetic Parameters for Yield and Yield Components in Hybrid Rice and Parents

Abstract: Thirty F1 rice hybrids along with complete set of 13 parents and checks were evaluated for variability, heritability and genetic advance in different yield and yield contributing traits. The data was recorded on five randomly selected plants for fifteen quantitative characters. The treatment, i.e. mean sum of squares due to genotypes showed significant differences for 14 characters studied, indicating the presence of high genetic variability among the genotypes. The estimates of GCV were lower than the respective PCV, indicating the influence of environmental factors on the expression of the traits studied. Characters like percent pollen fertility (99.9, 33.33), grain yield hill-1 (99.2, 31.13), harvest index (98.5, 30.42) and number of filled grains panicle-1 (97.8, 30.04) showed high heritability coupled with moderate genetic advance as percent of mean, suggesting that selection for the improvement of these characters may be rewarding. This also indicates greater role of non-additive gene action in their inheritance suggesting heterosis breeding could be used to improve these traits.

Estimates of combining ability and heterosis for yield and yield traits in maize population (Zea mays L.), under drought conditions in the northern Guinea and Sudan savanna zones of Borno State, Nigeria.

Abstract: Combining ability variances and effects were estimated for grain yield and other agronomic traits in maize (Zea mays L.). Nine parental maize varieties consisted of five IITA open pollinated varieties (OPVs) drought tolerant used as lines and four local varieties used as testers with various level of susceptibility to drought. These materials were crossed in a line x tester mating design during the 2007 cropping season to determine the GCA, SCA effects and the level of heterosis. Parents and crosses were evaluated in Biu and Damboa during the cropping season of 2009. Results from analysis of variance and combining ability showed that there were high and significant level of genetic variability among the parental lines used and their hybrids for almost all the traits study, thus suggesting the possibility for genetic improvement. The study also revealed the significant differences of general combining ability (GCA) effects of parents and that of specific combining ability (SCA) effects of hybrids. The relatively smaller proportion of GCA to SCA ratio indicated the predominance of non-additive genetic effects with respect to most of the traits. That is, estimates of GCA were consistently lower than SCA effects in most of the traits evaluated. This suggests that high performing hybrids such as EVDT-99WSTRC0 x EX-DAMBOA WHITE, TZEWDTSTRQPMC0 x EX-DAMBOA YELLOW, EVDTW99STRQPMCO x EX-DAMBOA WHITE, EVDTW99STRQPMCO x EX-DAMBOA YELLOW and TZECOMP3DTC1 x EX-BIU YELLOW may be used to develop potential varieties. Both additive and non-additive gene effects controlled most traits, but non-additive genetic effect was the more prevalence. These hybrids also revealed high parent heterosis in terms of grain yield. Very high level of higher parent heterosis is considered advantageous for drought tolerance and yield improvement. Hence, yield superiority of some hybrids over the higher parents suggested the possibility of their commercial exploitation. The parents: EVDT-99WSTRC0, TZE-WDTSTRQPMC0, and EX-DAMBOA WHITE were identified as the best general combiners in terms of GCA for days to 50% tasseling, for days to 50% silking, anthesis silking interval, plant height, number of cobs per plot, weight of cobs, dehusked cobs and grain yield. The parents and hybrids which featured prominently with respect to better general and specific combining abilities for maize grain yield and other agronomic traits could have genes that can be introgressed in to other promising lines in further developing high yielding and drought tolerant genotype.

Inheritance of the stay-green trait in tropical maize

Abstract: Stay-green maize genotypes have been associated with tolerance to biotic and abiotic stresses, including tolerance to drought, and to stalk and root lodging, but there is limited information on its inheritance. Thus, this research was conducted to study the inheritance of the stay-green trait using both conventional analysis and QTL mapping of the Design III in a tropical maize population developed from two inbred lines genetically divergent for this trait. Two-hundred and fifty F2 plants were genotyped with 177 microsatellite markers, and their backcrossed progenies to both parental inbreds were evaluated at three locations. Ten plants per plot were assessed 120 days after sowing and the plot means scores for stay-green, adjusted for days to silking emergence, were used for analysis. The additive variance was larger than the dominance variance, the genetic by location interaction variance presented a high magnitude, and the heritability coefficient on a plant-basis a low magnitude. Seventeen QTL were mapped, most of them were clustered on four chromosomes and accounted for by 73.08 % of the genetic variance. About half of the QTL interacted with location, and the average level of dominance was partial dominance. The additive effects were larger than the dominance effects; the latter were not unidirectional, so that heterosis could not be exploited in crosses. Procedures for marker-assisted selection to increase the level of stay-green are discussed and an approach is suggested for using both stable and non-stable QTL in a marker-assisted backcross program.