D
Darren C. Ames
Publications - 5
Citations - 347
Darren C. Ames is an academic researcher. The author has contributed to research in topics: Clinical decision support system & Biobank. The author has an hindex of 5, co-authored 5 publications receiving 257 citations.
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Journal ArticleDOI
Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects
Allison A. Regier,Yossi Farjoun,David E. Larson,Olga Krasheninina,Hyun Min Kang,Daniel P. Howrigan,Bo Juen Chen,Manisha Kher,Eric Banks,Darren C. Ames,Adam C. English,Heng Li,Jinchuan Xing,Yeting Zhang,Tara C. Matise,Gonçalo R. Abecasis,Will Salerno,Michael C. Zody,Benjamin M. Neale,Ira M. Hall +19 more
TL;DR: US genome centers and NIH programs define WGS data processing standards and a flexible validation method, facilitating collaboration in human genetics research.
Journal ArticleDOI
Analysis commons, a team approach to discovery in a big-data environment for genetic epidemiology.
Jennifer A. Brody,Alanna C. Morrison,Joshua C. Bis,Jeffrey R. O'Connell,Michael R. Brown,Jennifer E. Huffman,Darren C. Ames,Andrew Carroll,Matthew P. Conomos,Stacey Gabriel,Richard A. Gibbs,Stephanie M. Gogarten,Namrata Gupta,Cashell E. Jaquish,Andrew D. Johnson,Joshua P. Lewis,Xiaoming Liu,Alisa K. Manning,Alisa K. Manning,George J. Papanicolaou,Achilleas N. Pitsillides,Kenneth Rice,William J Salerno,Colleen M. Sitlani,Nicholas L. Smith,Susan R. Heckbert,Cathy C. Laurie,Braxton D. Mitchell,Braxton D. Mitchell,Ramachandran S. Vasan,Stephen S. Rich,Jerome I. Rotter,James G. Wilson,Eric Boerwinkle,Eric Boerwinkle,Bruce M. Psaty,Bruce M. Psaty,L. Adrienne Cupples +37 more
TL;DR: Analysis commons, a team approach to discovery in a big-data environment for genetic epidemiology, shows the potential of big data to improve the quality of research in the rapidly changing environment.
Journal ArticleDOI
Harmonizing Clinical Sequencing And Interpretation For The Emerge III Network
Hana Zouk,Eric Venner,Niall J. Lennon,Donna M. Muzny,Debra J. Abrams,Samuel E. Adunyah,Ladia Albertson-Junkans,Darren C. Ames,Paul S. Appelbaum,Samuel J. Aronson,Sharon Aufox,Lawrence J. Babb,Adithya Balasubramanian,Hana Bangash,Melissa A. Basford,Lisa Bastarache,Samantha Baxter,Meckenzie A. Behr,Barbara Benoit,Elizabeth J. Bhoj,Suzette J. Bielinski,Sarah T. Bland,Carrie L. Blout,Kenneth M. Borthwick,Erwin P. Bottinger,Mark Bowser,Harrison Brand,Murray H. Brilliant,Wendy Brodeur,Pedro J. Caraballo,David Carrell,Andrew Carroll,Berta Almoguera,Lisa M. Castillo,Victor Castro,Gauthami Chandanavelli,Theodore Chiang,Rex L. Chisholm,Kurt D. Christensen,Wendy K. Chung,Christopher G. Chute,Brittany City,Beth L. Cobb,John J. Connolly,Paul K. Crane,Katherine D. Crew,David R. Crosslin,Mariza de Andrade,Jessica De la Cruz,Shawn Denson,Josh C. Denny,Tim DeSmet,Ozan Dikilitas,Christopher A. Friedrich,Stephanie M. Fullerton,Birgit Funke,Stacey Gabriel,Vivian S. Gainer,Ali G. Gharavi,Andrew M. Glazer,Joseph T. Glessner,Jessica Goehringer,Adam S. Gordon,Chet Graham,Robert C. Green,Justin H. Gundelach,Jyoti G. Dayal,Heather S. Hain,Hakon Hakonarson,Maegan V. Harden,John B. Harley,Margaret Harr,Andrea L. Hartzler,M. Geoffrey Hayes,Scott J. Hebbring,Nora B. Henrikson,Andrew Hershey,Christin Hoell,Ingrid A. Holm,Kayla Marie Howell,George Hripcsak,Jianhong Hu,Gail P. Jarvik,Joy Jayaseelan,Yunyun Jiang,Yoonjung Yoonie Joo,Sheethal Jose,Navya Shilpa Josyula,Anne E. Justice,Sara E. Kalla,Divya Kalra,Elizabeth W. Karlson,Melissa A. Kelly,Brendan J. Keating,Eimear E. Kenny,Dustin Key,Krzysztof Kiryluk,Terrie Kitchner,Barbara J. Klanderman,Eric W. Klee,David C. Kochan,Viktoriya Korchina,Leah C. Kottyan,Christie Kovar,Emily Kudalkar,Iftikhar J. Kullo,Philip E. Lammers,Eric B. Larson,Matthew S. Lebo,Magalie S. Leduc,Ming Ta (Michael) Lee,Kathleen A. Leppig,Nancy D. Leslie,Rongling Li,Wayne H. Liang,Chiao-Feng Lin,Jodell E. Linder,Noralane M. Lindor,Todd Lingren,James G. Linneman,Cong Liu,Wen Liu,Xiuping Liu,John Lynch,Hayley Lyon,Alyssa Macbeth,Harshad Mahadeshwar,Lisa Mahanta,Brad Malin,Teri A. Manolio,Maddalena Marasa,Keith Marsolo,Michael J. Dinsmore,Sheila Dodge,Elizabeth Hynes,Phil Dunlea,Todd L. Edwards,Christine M. Eng,David Fasel,Alex Fedotov,QiPing Feng,Mark Fleharty,Andrea Foster,Robert R. Freimuth,Michelle L. McGowan,Elizabeth M. McNally,James Meldrim,Frank D. Mentch,Jonathan D. Mosley,Shubhabrata Mukherjee,Thomas E. Mullen,Jesse Muniz,David R. Murdock,Shawn N. Murphy,Mullai Murugan,Melanie F. Myers,Bahram Namjou,Yizhao Ni,Aniwaa Owusu Obeng,Robert C. Onofrio,Casey Overby Taylor,Thomas N. Person,Josh F. Peterson,Lynn Petukhova,Cassandra J. Pisieczko,Siddharth Pratap,Cynthia A. Prows,Megan J. Puckelwartz,Alanna Kulchak Rahm,Ritika Raj,James D. Ralston,Arvind Ramaprasan,Andrea H. Ramirez,Luke V. Rasmussen,Laura J. Rasmussen-Torvik,Hila Milo Rasouly,Soumya Raychaudhuri,Marylyn D. Ritchie,Catherine M. Rives,Beenish Riza,Dan M. Roden,Elisabeth A. Rosenthal,Avni Santani,Dan Schaid,Steven E. Scherer,Stuart A. Scott,Aaron Scrol,Soumitra Sengupta,Ning Shang,Himanshu Sharma,Richard R. Sharp,Rajbir Singh,Patrick M. A. Sleiman,Kara Slowik,Joshua C. Smith,Maureen E. Smith,Jordan W. Smoller,Sunghwan Sohn,Ian B. Stanaway,Justin Starren,Mary Stroud,Jessica Su,Kasia Tolwinski,Sara L. Van Driest,Sean M. Vargas,Matthew Varugheese,David L. Veenstra,Miguel Verbitsky,Gina Vicente,Michael Wagner,Kimberly Walker,Theresa L. Walunas,Liwen Wang,Qiaoyan Wang,Wei-Qi Wei,Scott T. Weiss,Georgia L. Wiesner,Quinn S. Wells,Chunhua Weng,Peter White,Ken Wiley,Janet L. Williams,Marc S. Williams,Michael W. Wilson,Leora Witkowski,Laura Allison Woods,Betty Woolf,Tsung-Jung Wu,Julia Wynn,Yaping Yang,Victoria Yi,Ge Zhang,Lan Zhang,Heidi L. Rehm,Richard A. Gibbs +234 more
TL;DR: This study accomplished integration of structured genomic results into multiple electronic health record (EHR) systems, setting the stage for clinical decision support to enable genomic medicine.
Journal ArticleDOI
Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example.
Samuel J. Aronson,Lawrence J. Babb,Darren C. Ames,Richard A. Gibbs,Eric Venner,John J. Connelly,Keith Marsolo,Keith Marsolo,Chunhua Weng,Marc S. Williams,Andrea L. Hartzler,Andrea L. Hartzler,Wayne H. Liang,James D. Ralston,James D. Ralston,Emily Beth Devine,Shawn N. Murphy,Christopher G. Chute,Pedro J. Caraballo,Iftikhar J. Kullo,Robert R. Freimuth,Luke V. Rasmussen,Firas Wehbe,Josh F. Peterson,Jamie R. Robinson,Ken Wiley,Casey Overby Taylor +26 more
TL;DR: This work surveyed the capabilities and needs of different network participants, established a common transfer format, and implemented transfer mechanisms based on this format that serve as a case example for both standards bodies and organizations working to build the infrastructure required to provide better electronic clinical decision support for clinicians.
Posted ContentDOI
Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects
Allison A. Regier,Yossi Farjoun,David E. Larson,Olga Krasheninina,Hyun Min Kang,Daniel P. Howrigan,Bo Juen Chen,Manisha Kher,Eric Banks,Darren C. Ames,Adam C. English,Heng Li,Gonçalo R. Abecasis,Will Salerno,Michael C. Zody,Benjamin M. Neale,Ira M. Hall +16 more
TL;DR: WGS data processing standards are defined that allow different groups to produce “functionally equivalent” results suitable for joint variant calling with minimal batch effects, which alleviates a key technical bottleneck for genome aggregation and helps lay the foundation for broad data sharing and community-wide “big-data” human genetics studies.